Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Dickeya dianthicola ME23

Subject, 1148 a.a., transcription-repair coupling factor from Escherichia coli BL21

 Score = 1856 bits (4807), Expect = 0.0
 Identities = 921/1148 (80%), Positives = 1027/1148 (89%)

Query: 1    MPEQYRYTLPGKAGEQRLLGQLTGAACAVECAEIVERHAGLVVLITPDMQNALRLRDEIQ 60
            MPEQYRYTLP KAGEQRLLG+LTGAACA   AEI ERHAG VVLI PDMQNALRL DEI 
Sbjct: 1    MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIS 60

Query: 61   QFTAQPVMTLPDWETLPYDSFSPHQEIISARLSTLYQLPSLTRGVLILPVNTLMQKVCPH 120
            QFT Q VM L DWETLPYDSFSPHQ+IIS+RLSTLYQLP++ RGVLI+PVNTLMQ+VCPH
Sbjct: 61   QFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH 120

Query: 121  AFLHGHALMLKKGQRLSRDRLRNQLEQAGYRSVDQVMEHGEFATRGALLDLFPMGSEEPF 180
            +FLHGHAL++KKGQRLSRD LR QL+ AGYR VDQVMEHGE+ATRGALLDLFPMGSE P+
Sbjct: 121  SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 180

Query: 181  RIDFFDDEIDSLRLFDADTQRTLNEVEQIHLLPAREFPTDKTAIELFRSQWREQFEVRRD 240
            R+DFFDDEIDSLR+FD D+QRTL EVE I+LLPA EFPTDK AIELFRSQWR+ FEV+RD
Sbjct: 181  RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD 240

Query: 241  AEHVYQQVSKGTLPAGIEYWQSLFFNQPLPALFSYLPTGTLLVNTGDIQQGADRFWQDIQ 300
             EH+YQQVSKGTLPAGIEYWQ LFF++PLP LFSY P  TLLVNTGD++  A+RF  D  
Sbjct: 241  PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLENSAERFQADTL 300

Query: 301  QRHDSRRVDPMRPLLPPNALWLPVDTLFAELKQWPRVQLRSDTLPDKAANINLGYQPLPD 360
             R ++R VDPMRPLLPP +LWL VD LF+ELK WPRVQL+++ LP KAAN NLG++ LPD
Sbjct: 301  ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFEKLPD 360

Query: 361  LAVQHQNKSPLDALRRFVEQFGGQIVFSVESEGRRETLQEVLSRIKLSPAPVKSLEQTAS 420
            LAVQ Q K+PLDALR+F+E F G +VFSVESEGRRE L E+L+RIK++P  +  L++ + 
Sbjct: 361  LAVQAQQKAPLDALRKFLESFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASD 420

Query: 421  PGCYLMIGASEHGFIDTLRQRTLICESDLLGERVSRRRQDSRRTINTDTLIRNLAELRPG 480
             G YLMIGA+EHGF+D +R   LICESDLLGERV+RRRQDSRRTIN DTLIRNLAEL  G
Sbjct: 421  RGRYLMIGAAEHGFVDKVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG 480

Query: 481  QPVVHLEHGVGRYAGLTTLEAGGIKAEYLILHYAGEDKLYVPVSSLHLISRYAGGAEESA 540
            QPVVHLEHGVGRYAG+TTLEAGGI  EYL+L YA + KLYVPVSSLHLISRYAGGAEE+A
Sbjct: 481  QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA 540

Query: 541  PLHKLGGDAWVRARQKAAEKVRDVAAELLDVYAQRAAHTGFAFKHDREQYQLFCQGFPFD 600
            PLHKLGGDAW RARQKAAEKVRDVAAELLD+YAQRAA  GFAFKHDREQYQLFC  FPF+
Sbjct: 541  PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE 600

Query: 601  TTPDQAQAINAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL 660
            TTPDQAQAINAVLSDMC+PLAMDRLVCGDVGFGKTEVAMRAAFLAV+NHKQVAVLVPTTL
Sbjct: 601  TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL 660

Query: 661  LAQQHFDNFRDRFANWPVRIEMLSRFRSQKEQTQVLEQTQEGKVDILIGTHKLLQSDVYW 720
            LAQQH+DNFRDRFANWPVRIEM+SRFRS KEQTQ+L +  EGK+DILIGTHKLLQSDV +
Sbjct: 661  LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF 720

Query: 721  LDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGIRDLSIIATPP 780
             DLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSG+RDLSIIATPP
Sbjct: 721  KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 780

Query: 781  ARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIEKAAQQLNELVPEARIAI 840
            ARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENI+KAA++L ELVPEARIAI
Sbjct: 781  ARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI 840

Query: 841  GHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLR 900
            GHGQMRER+LERVMNDFHHQRFNVLVCTTIIETGIDIP+ANTIIIERADHFGLAQLHQLR
Sbjct: 841  GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900

Query: 901  GRVGRSHHQAYAYLLTPNPKAMSNDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960
            GRVGRSHHQAYA+LLTP+PKAM+ DA KRLEAIASLEDLGAGFALATHDLEIRGAGELLG
Sbjct: 901  GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960

Query: 961  EGQSGQMESVGFSLYMDLLESAVESLKAGREPSLEDLISGQTDVELRLPALLPDDFIPDV 1020
            E QSG ME++GFSLYM+LLE+AV++LKAGREPSLEDL S QT+VELR+P+LLPDDFIPDV
Sbjct: 961  EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSHQTEVELRMPSLLPDDFIPDV 1020

Query: 1021 NTRLSFYKRIASAKNDNELDDLKAELIDRFGKLPDAARHLLQVAGLRQQAQTLGIKRIEG 1080
            NTRLSFYKRIASAK +NEL+++K ELIDRFG LPD AR LL +A LRQQAQ LGI+++EG
Sbjct: 1021 NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG 1080

Query: 1081 NDKGGFVEFSQHNRVDPTHLIGLLQRDPKIYRLDGPSRLKFIKDLGGYPQRLTFITTLLE 1140
            N+KGG +EF++ N V+P  LIGLLQ+ P+ YRLDGP+RLKFI+DL     R+ ++   + 
Sbjct: 1081 NEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMR 1140

Query: 1141 EMAQHTCA 1148
            E+ ++  A
Sbjct: 1141 ELEENAIA 1148