Pairwise Alignments

Query, 1236 a.a., exodeoxyribonuclease V subunit beta from Dickeya dianthicola ME23

Subject, 1224 a.a., Chi activated ATP-dependent DNA helicase and dsDNA/ssDNA exonuclease from Pseudomonas putida KT2440

 Score = 1228 bits (3178), Expect = 0.0
 Identities = 657/1233 (53%), Positives = 829/1233 (67%), Gaps = 45/1233 (3%)

Query: 13   LRFPLAGSRLIEASAGTGKTFTIAMLYVRLVLGHGGEQAFSRPLNPPEILVVTFTDAATR 72
            L FPL GS+LIEASAGTGKTFTI+ LY+RL+LGHGGEQ F R L PP+ILVVTFTDAAT+
Sbjct: 9    LSFPLHGSQLIEASAGTGKTFTISALYLRLILGHGGEQGFERELLPPQILVVTFTDAATK 68

Query: 73   ELRDRIRARLAQAAGYFQPDGKDGKDGKDDKDDKDDEADPLLRALRADYPPEQWPACARK 132
            ELR+RIRARLA+AA +F+ + +               ADPLL  LR DYP E WP CA +
Sbjct: 69   ELRERIRARLAEAARFFRGELEG--------------ADPLLHQLRDDYPQENWPRCAGR 114

Query: 133  LQLAAEWMDEAAVSTIHGWCNRMLGEHAFDSGSLFNQTLETDQSDVLLEVVRDYWRTFFF 192
            L++A +WMDEAAVSTIHGWC RML EHAFDSGSLF QTLETD S++L +V+RDYWR F +
Sbjct: 115  LEIAVQWMDEAAVSTIHGWCQRMLREHAFDSGSLFTQTLETDHSELLGQVMRDYWRRFCY 174

Query: 193  PLDARDVLELRDSWSSPEHFYRSVTPLLEYADEIGIDDLPAQIFSAVREEKTRQLTALKA 252
             +    +  +R +W SP+     + PL            PA +  A  +++  QL  +KA
Sbjct: 175  GMQGDALAWVRGNWGSPDALLPRIRPLFGRVRAQQNGPEPAALIQASLQQRGAQLARIKA 234

Query: 253  PWPQWCGELRDLLNAAVAQKKADGRKLQARYFEAWLDKLQHWAASDETT-LDIGTGWTRL 311
            PW QW  ELR +   A+A K+ DGRK+QARYFE W DKL  WA+ ++   LD+GTG+TRL
Sbjct: 235  PWAQWAEELRQICRDALAAKQVDGRKMQARYFEPWFDKLCAWASDEQLVELDLGTGFTRL 294

Query: 312  TPQGLRECWKVPEETPQHPALTAMEALQQQLSDLPEPRSQLLRHACRWVSQRFRHEQESR 371
            TP G+ E WK   E P+HPAL AM+ LQQQL  L  P + LL HA  WVS RF  E+  R
Sbjct: 295  TPAGMAEAWK--GEPPEHPALNAMQHLQQQLQALDSPDAPLLEHAASWVSARFEVEKRRR 352

Query: 372  AQMGFQDLLTRLDAALRGDNGERLAQRIRRQFPVAMIDEFQDTDPLQYRIFDTLYRVADN 431
            A+MGF D+L RL  AL  + GERLA  IR QFPVA+IDEFQDTDP+QY IF+ +Y++++N
Sbjct: 353  AEMGFDDMLVRLQHALASEAGERLASLIREQFPVALIDEFQDTDPVQYGIFERIYQISEN 412

Query: 432  DPQQGLILIGDPKQAIYAFRGADIYTYLRARRDTDGRHYTLGTNFRSTQAMVGAVNQVFM 491
              + GL +IGDPKQAIYAFRGADIYTYL ARR T GR ++L TN+RS++AMV AVNQVF+
Sbjct: 413  RAETGLFMIGDPKQAIYAFRGADIYTYLAARRATSGRLHSLDTNYRSSKAMVAAVNQVFL 472

Query: 492  QAENRADGAGAFLFRQPDGGNPVPFLPVQANGRDEAWILEGAAAAALTCWTLATDQPLSS 551
            QAE R  G GAFLFR+ D  NP+PF+ V+A GR E  +++G  +AAL CW L +++P+SS
Sbjct: 473  QAEAREAGRGAFLFREAD-DNPLPFIEVRAKGRGEQLLIDGEVSAALQCWQLESEEPVSS 531

Query: 552  AEYRQRMAAGCAREMVRLLQLGGQGRAGFAVPGQALRPVRPGDMAVLVNTGREAMAVRAQ 611
            + YRQ+MAA CA  +V LL  G QG +GF      LR   P D+A+LV  G EA  VRA+
Sbjct: 532  SVYRQQMAASCASHIVALLNGGQQGTSGFRNAEGELRACLPSDIAILVRDGHEAQMVRAE 591

Query: 612  LSARGVRSVYLSDRESVFDSPQAGELHCWLAACADPENDRLLRAALATPLLGLSWQALDR 671
            L+AR VRSVYLSD++SVF + +A +L  WL ACA+P+++RLL+AALA+  LGLS  ALDR
Sbjct: 592  LAAREVRSVYLSDKDSVFAAQEAHDLLAWLKACAEPDSERLLKAALASLTLGLSLAALDR 651

Query: 672  LNHDEQEWERRVMQFVRYQSCWRQQGVLPMLRRLMWEFDVPRRLL-AADNARALTDVLHL 730
            LN DE+ WE  VM+F  Y+  W++QGVLPMLR L+ +F +PR L+  +D  R LT++LHL
Sbjct: 652  LNQDERVWESWVMRFRLYRDTWQRQGVLPMLRHLLHDFQLPRTLIRRSDGERVLTNLLHL 711

Query: 731  SELLQQASVHLDGEHALIRYLAEQCQADNPGGDTLKLRLESDADLVKVVTVHKSKGLEYP 790
            +ELLQQA+  LDGE ALIR+LAE   +    G+   LRLESD  LVKVVT+HKSKGLEYP
Sbjct: 712  AELLQQAAGELDGEQALIRHLAEHLASSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYP 771

Query: 791  LVFLPFACAFRAVNQRDVPLKYHDDDGQPRLELTASDEAVQRADHERLGEDLRKFYVALT 850
            LV+LPF C  + V+   +PL +HD +G   L LT   E ++RAD ERL EDLR  YVALT
Sbjct: 772  LVYLPFICTSKPVDGSRLPLAWHDSEGNAHLTLTPDQEQIERADDERLAEDLRLLYVALT 831

Query: 851  RARYALWLGMAPLK-------ELEKSAPGYLLGAGEPLE-PAQLA---QPLSAWCGAHSR 899
            RA++A WLG+A LK       +L +SA GYLLG G  L   AQL    Q L+A C  H  
Sbjct: 832  RAQHACWLGVADLKRGNLKSSQLHRSAFGYLLGGGLALAGSAQLTDWLQALAASC-PHIT 890

Query: 900  MAPLPETDDEVYR-AELNTPALGQEPPLPDMRRHRWRITSYSGLQLAPEGHYREFREPSA 958
               LP+ D+++YR        L    P      H W I SYS L++          +   
Sbjct: 891  CPGLPQADEQMYRMPHAERELLPARRPRHAAAEH-WWIASYSALRVGD--------QTLG 941

Query: 959  GDVPEVQSAQQETFSEPQAFAEHLPPLPAGLDMYSFPRGAAPGSFLHGLLEWAGKEGFAA 1018
             D  + Q    +   + Q   E   P  +G D++ FPRG  PG+FLHGLLEWAG+EGF+ 
Sbjct: 942  ADSSQAQQLLDDEVPDAQVLRE--VPADSG-DIHRFPRGPNPGTFLHGLLEWAGREGFSE 998

Query: 1019 LAAERHRVEDQVARRCNRQGWTQWIPMLTDWLMALLSQPLALPTSPGSAVSLAGLTQYQV 1078
            ++A    +E  V +RCNR+ W  WIP L+ W+  LLS+ L LP S  S V+L  L  YQ+
Sbjct: 999  VSANPQLIERTVGQRCNRRDWAGWIPTLSHWMQRLLSEALPLPGSDQS-VTLGQLRHYQI 1057

Query: 1079 EMEFWFALSQVDTQVLDQQVSAATLAGEPRAVLMREQLNGMLKGFIDLVFEHQGRYYVLD 1138
            EMEFWFA  +VD + LD+ V+  T  G  R       LNGM KGFIDL FE  GRYYV D
Sbjct: 1058 EMEFWFASHRVDAEQLDRLVARHTHPGLARPAAQPTVLNGMFKGFIDLAFELDGRYYVTD 1117

Query: 1139 YKSNWLGADAADYDPPRMARAMLDHRYDLQLALYLFALHRLLKSRLPDYDYDRHVGGALY 1198
            YKSNWLGAD   YD   M +A+L+HRYDLQ  LYL ALHR L++RL DYDYDRHVGGAL+
Sbjct: 1118 YKSNWLGADIQAYDAMAMEKAILEHRYDLQYVLYLLALHRQLRARLADYDYDRHVGGALF 1177

Query: 1199 LFLRSSQAPGGGVFAQRPDWALMEALERLFSGE 1231
            +FLR + + G GV+  +P   L+E+L+ LF GE
Sbjct: 1178 IFLRGASSSGHGVYHAKPPRELIESLDALFRGE 1210