Pairwise Alignments

Query, 467 a.a., TolC family outer membrane protein from Dickeya dianthicola ME23

Subject, 479 a.a., channel protein TolC from Pseudomonas simiae WCS417

 Score =  142 bits (358), Expect = 2e-38
 Identities = 112/438 (25%), Positives = 198/438 (45%), Gaps = 34/438 (7%)

Query: 29  LLDAWELALRNDAQLQAAGFERDAGQEEVAIGRAGLLPSLQYNYGVNYSHSKVTQQDRAL 88
           L+  ++ A+ N+A L AA  +  A +E V   RAGLLP+L     +N   +++       
Sbjct: 32  LVSVYQEAVDNNADLAAARAQYGAQKEVVPQARAGLLPNLTGGADINNVRTQIDTPAATA 91

Query: 89  NNTTKRDYDNYVSTLTLRQPLLDYAAWARYQQGITRKLMADQRFRDRSQDLMVRLYQAWS 148
           N    RD  ++ +TL+  QPL     W + Q        A  +     Q+L+++  + + 
Sbjct: 92  N----RDAHSWRATLS--QPLFRADRWFQLQAAEATNEQAALQLSATEQNLILQSAENYF 145

Query: 149 EALLAQEKLLLLDAQRRAYQEQLALNRRLLAAGEGTQTDLRETEARYTVTEAQRI----E 204
             L AQ+ L    A+  A++ QL  +      G   +TD+ +++A Y    A RI    +
Sbjct: 146 AVLRAQDNLASTKAEENAFKRQLDQSNERFDVGLSDKTDVLQSQASYDTARANRILAQRQ 205

Query: 205 QEDTLDAAMT----DLENMMGLPLQIQDLSPLALDTLPDNVTENRSLSQWRELAVRHNAK 260
            ED  +A +T       ++ G+   +  L PL  D              W E A R N  
Sbjct: 206 VEDAFEALITLTNRQYNSIQGIVHTLPVLPPLPNDA-----------KAWVETAGRQNLN 254

Query: 261 LAVQRENVDYSRYEIERNRAGHLPTLDLVAS----TRNSLSESEYN-----YNQKYDTQT 311
           L      V  +   +++ +AGH PTLD VA       ++L  S  N     Y    + +T
Sbjct: 255 LLASNYAVTAAEETLKQRKAGHAPTLDAVAQYEKGDNDALGFSNPNAFGTPYRGDVEQRT 314

Query: 312 VGLQVRVPLYSGGAVSASMRQATAEYQQSQAELDNQTRQTFAELRRQFNLCANGAAKIRA 371
           +GL++ +P+YSGG  S+ +R++ +   Q++ + +   RQ     R           +++A
Sbjct: 315 IGLRLSIPIYSGGLTSSQVRESYSRLGQTEQQREGLRRQVVENTRNLHRAVNTDVEQVQA 374

Query: 372 WQMSVTAAEEAIRATRQSVAGGERINLDVLMAEQEWYNARRELTEVKYRWLQAWLNLRYT 431
            + S+ + + A+ AT      G R  +DVL ++++ Y + R     +Y ++   L L+  
Sbjct: 375 RRQSIISNQSAVEATEIGYQVGTRNIVDVLDSQRQLYASVRNYNNSRYDYILDNLRLKQA 434

Query: 432 GGTLNEQDMMQLAAWFQS 449
            GTLN  D+  LA + ++
Sbjct: 435 AGTLNPGDLQDLARYLKA 452



 Score = 29.6 bits (65), Expect = 2e-04
 Identities = 46/185 (24%), Positives = 71/185 (38%), Gaps = 28/185 (15%)

Query: 241 VTENRSLSQWRELAVRHNAKLAVQRENVDYSRYEIERNRAGHLPTLDLVASTRNSLSESE 300
           ++ N  L    + AV +NA LA  R      +  + + RAG LP L   A   N  ++ +
Sbjct: 26  LSANTDLVSVYQEAVDNNADLAAARAQYGAQKEVVPQARAGLLPNLTGGADINNVRTQID 85

Query: 301 Y-NYNQKYDTQTVGLQVRVPLYSGG------AVSASMRQATAEYQQSQAELDNQTRQT-F 352
                   D  +    +  PL+         A  A+  QA  +   ++  L  Q+ +  F
Sbjct: 86  TPAATANRDAHSWRATLSQPLFRADRWFQLQAAEATNEQAALQLSATEQNLILQSAENYF 145

Query: 353 AELRRQFNLCANGAAKIRAWQMSVTAAEEAIRATRQSVAGGERINL------DVLMAEQE 406
           A LR Q NL             S  A E A +  RQ     ER ++      DVL ++  
Sbjct: 146 AVLRAQDNLA------------STKAEENAFK--RQLDQSNERFDVGLSDKTDVLQSQAS 191

Query: 407 WYNAR 411
           +  AR
Sbjct: 192 YDTAR 196