Pairwise Alignments

Query, 467 a.a., TolC family outer membrane protein from Dickeya dianthicola ME23

Subject, 493 a.a., outer membrane channel protein TolC from Escherichia coli ECRC62

 Score =  154 bits (388), Expect = 8e-42
 Identities = 122/454 (26%), Positives = 218/454 (48%), Gaps = 32/454 (7%)

Query: 4   KAVLLMVVGVLEVLSLSGGSA--QAVGLLDAWELALRNDAQLQAAGFERDAGQEEVAIGR 61
           K +L +++G    LSLSG S+  QA  L+  ++ A  ++ +L+ +  +RDA  E++   R
Sbjct: 2   KKLLPILIG----LSLSGFSSLSQAENLMQVYQQARLSNPELRKSAADRDAAFEKINEAR 57

Query: 62  AGLLPSLQYNYGVNYSHSKVTQQDRALNNTTKRDYDNYVSTLTLRQPLLDYAAWARYQQG 121
           + LLP L    G +Y++S   +    +N+          ++L L Q + D + W      
Sbjct: 58  SPLLPQL--GLGADYTYSNGYRDANGINSNATS------ASLQLTQSIFDMSKWRALTLQ 109

Query: 122 ITRKLMADQRFRDRSQDLMVRLYQAWSEALLAQEKLLLLDAQRRAYQEQLALNRRLLAAG 181
                + D  ++   Q L++    A+   L A + L    AQ+ A   QL    +    G
Sbjct: 110 EKAAGIQDVTYQTDQQTLILNTATAYFNVLNAIDVLSYTQAQKEAIYRQLDQTTQRFNVG 169

Query: 182 EGTQTDLRETEARYTVTEAQRIEQEDTLDAAMTDLENMMGLPLQIQDLSPLALDTLPDNV 241
               TD++   A+Y    A  +   + LD A+  L  + G      +L+ L ++    + 
Sbjct: 170 LVAITDVQNARAQYDTVLANEVTARNNLDNAVEQLRQITGN--YYPELAALNVENFKTD- 226

Query: 242 TENRSLSQWRELAVRHNAKLAVQRENVDYSRYEIERNRAGHLPTLDLVASTRNSLSESEY 301
            + + ++   + A + N  L   R + D +R +I + + GHLPTLDL AST   +S++ Y
Sbjct: 227 -KPQPVNALLKEAEKRNLSLLQARLSQDLAREQIRQAQDGHLPTLDLTAST--GISDTSY 283

Query: 302 NYNQ-------KYDTQT-----VGLQVRVPLYSGGAVSASMRQATAEYQQSQAELDNQTR 349
           + ++       +YD        VGL   +P+Y GG V++ ++QA   +  +  +L++  R
Sbjct: 284 SGSKTRGAAGTQYDDSNMGQNKVGLSFSLPIYQGGMVNSQVKQAQYNFVGASEQLESAHR 343

Query: 350 QTFAELRRQFNLCANGAAKIRAWQMSVTAAEEAIRATRQSVAGGERINLDVLMAEQEWYN 409
                +R  FN      + I A++ +V +A+ ++ A     + G R  +DVL A    YN
Sbjct: 344 SVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAMEAGYSVGTRTIVDVLDATTTLYN 403

Query: 410 ARRELTEVKYRWLQAWLNLRYTGGTLNEQDMMQL 443
           A++EL   +Y +L   LN++   GTLNEQD++ L
Sbjct: 404 AKQELANARYNYLINQLNIKSALGTLNEQDLLAL 437