Pairwise Alignments

Query, 458 a.a., ATP-binding protein from Dickeya dianthicola ME23

Subject, 764 a.a., AAA family ATPase Cdc48 from Sphingobium sp. HT1-2

 Score = 71.6 bits (174), Expect = 8e-17
 Identities = 57/193 (29%), Positives = 96/193 (49%), Gaps = 8/193 (4%)

Query: 237 VKPGYRALFFGPPGTGKTLTAALLAKVTDRDVYRVDVSMVVSKYIGETEKNLSRLF-DAA 295
           V P    +  GPPGTGKT  A  +A  ++ + + ++   ++    GE+EK L  +F +AA
Sbjct: 238 VDPPKGVMLHGPPGTGKTRLARAVANESEAEFFLINGPEIMGSAYGESEKKLRDIFEEAA 297

Query: 296 SYKDWILFFDEADALFGKR-TVTQSSNDRHANQLTGYLLQRIEDFPGTVIL-ATNLKANM 353
                ILF DE D++  KR  VT  +  R   QL   L+  +E     V++ ATN    +
Sbjct: 298 KAAPSILFIDEIDSIAPKRGQVTGETEKRLVAQLL-TLMDGLEPRTNLVVIAATNRPEAI 356

Query: 354 DDAFTR--RFQNMVEFALPGPQERLQLWQNAFREVCELGDDIELSRIAE-DFALSGGQIV 410
           D+A  R  RF   +   +P  + R ++     R +  LGD ++L+ +A   +   G  + 
Sbjct: 357 DEALRRPGRFDREIVVGVPDERGRREILGIHTRGM-PLGDRVDLAELARMTYGFVGADLA 415

Query: 411 NVLRQCALQAIRR 423
            + R+ A++ +RR
Sbjct: 416 ALTREAAIETVRR 428



 Score = 67.0 bits (162), Expect = 2e-15
 Identities = 54/203 (26%), Positives = 100/203 (49%), Gaps = 18/203 (8%)

Query: 237 VKPGYRALFFGPPGTGKTLTAALLAKVTDRDVYRVDVSMVVSKYIGETEKNLSRLF-DAA 295
           ++P    L +GPPGTGKTL A  +A+    +      S ++SK+ GE+E+ ++RLF  A 
Sbjct: 511 IRPAKGFLLYGPPGTGKTLLAKAVAREAQANFIATKSSDLLSKWYGESEQQIARLFARAR 570

Query: 296 SYKDWILFFDEADAL-------FGKRTVTQSSNDRHANQLTGYLLQRIEDFPGTVIL-AT 347
                ++F DE D+L        G+  VT+   +    ++ G     +E+    V++ AT
Sbjct: 571 QVAPTVIFIDELDSLVPARGGGLGEPAVTERVVNTILAEMDG-----LEELQSVVVIGAT 625

Query: 348 NLKANMDDAFTR--RFQNMVEFALPGPQERLQLWQNAFREVCELGDDIELSRI-AEDFAL 404
           N    +D A  R  RF  ++   +P    R ++     +++  L  D++L ++ A     
Sbjct: 626 NRPTLVDPALLRPGRFDELIYVPVPDQAGRKRILAIHTKKM-PLASDVDLDQLAARTERF 684

Query: 405 SGGQIVNVLRQCALQAIRRGERV 427
           +G  + ++ R+  L A+R+  +V
Sbjct: 685 TGADLEDLSRRAGLIALRQSLQV 707