Pairwise Alignments

Query, 530 a.a., microcin C ABC transporter ATP-binding protein YejF from Dickeya dianthicola ME23

Subject, 623 a.a., Dipeptide transport ATP-binding protein DppD in protein degradation cluster from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  454 bits (1169), Expect = e-132
 Identities = 261/558 (46%), Positives = 353/558 (63%), Gaps = 32/558 (5%)

Query: 1   MSAHPLLEIRDLSIAFRNGGQQRQVVDQVSLSIEAGETLALVGESGSGKSVTALSVLRLL 60
           + +  +L +  L+IAF + GQQ   V  VSL ++ GETLA+VGESGSGKSVTAL+++RL+
Sbjct: 7   LDSRDVLSVSGLNIAFHHEGQQVDAVRNVSLRLKRGETLAIVGESGSGKSVTALALMRLI 66

Query: 61  PSPPVVYLHGDILFAGES-----LLNASEQRLRQVRGDRIAMIFQEPMVSLNPLHTIEKQ 115
                    G++L    +     L   S+ ++R+VRG  IAMIFQEPM SLNP+ T+ +Q
Sbjct: 67  EQSGANVRCGEMLLRRRNRQVIELSEQSDAQMRRVRGADIAMIFQEPMTSLNPVFTVGEQ 126

Query: 116 LAEVLSLHRGMRRDAARGEIVGCLERVGIRQAARRLADFPHQLSGGERQRVMIAMALLTQ 175
           +AE + LH+G   + A  E    L++V I ++   L+ +PHQLSGG RQRVMIAMAL  +
Sbjct: 127 IAESIRLHQGASHEEALAEAKRMLDQVRIPESQAILSRYPHQLSGGMRQRVMIAMALSCR 186

Query: 176 PDLLIADEPTTALDVTVQAQILDLLNELKQELNMGLLFITHNLNIVRRLADRVAVMQAGR 235
           P +LIADEPTTALDVT+QAQIL L+  L+QE++MG++FITH++ +V  +ADRV VM  G 
Sbjct: 187 PAVLIADEPTTALDVTIQAQILQLIKVLQQEMSMGVIFITHDMGVVADIADRVLVMYQGE 246

Query: 236 CVEQNRTRELFSAPQHPYTRQLLNAEP-----------------TGEAPPLEPT------ 272
            VE     ++F AP HPYT+ LL A P                 + + P L  +      
Sbjct: 247 AVETGSVEQIFHAPTHPYTQTLLAAVPQLGAMRGHSLPRRFPLISADEPALYESQIEQDT 306

Query: 273 ---ASTLLDVRELGVSFPIRRGLLRRTVGEKSVLQALSFSLRRGESIGLVGESGSGKSTT 329
                 +L VR L   FP+R GL  R   E   ++ +SF L  GE++ LVGESGSGKSTT
Sbjct: 307 VVEGEPILQVRGLVTRFPLRSGLFNRVTREVHAVENISFDLWPGETLSLVGESGSGKSTT 366

Query: 330 GLALLRLLRSR-GEIWFDGQPLHRFNHKQMLPVRRRIQVVFQDPNGSLNPRLNVEQIIAE 388
           G ALLRL+ SR GEI F+GQ +   +  ++ P+RR IQ +FQDP  SL+PR  V   I E
Sbjct: 367 GRALLRLVESRQGEIIFNGQRIDTLSAGKLQPLRRDIQCIFQDPYASLDPRQTVGYSIME 426

Query: 389 GLRVHHPLSPAEQTQRVIQSMQEVGLDPDSRHRYPSEFSGGQRQRIAIARALILQPELLI 448
            LR+H         +RV   ++ VGL P+   RYP EFSGGQRQRI IARAL L P+++I
Sbjct: 427 PLRIHGLGQGDAAAKRVAWLLERVGLRPEHAWRYPHEFSGGQRQRICIARALALNPKVII 486

Query: 449 LDEPTSSLDRTVQAQILTLLKTLQQTHQLAYLFISHDLHVVRSLCHQVIVLRHGEVVEQG 508
            DE  S+LD +V+ QI+ LL  LQ+   +AYLFISHD+ VV  + H+V V+  G++VE G
Sbjct: 487 ADEAVSALDVSVRGQIINLLLDLQREMGIAYLFISHDMAVVERISHRVAVMYLGQIVEMG 546

Query: 509 ECRQLFEHPQQDYTRQLL 526
             R +FE+PQ  YTR+L+
Sbjct: 547 PRRAVFENPQHPYTRKLM 564



 Score =  192 bits (487), Expect = 4e-53
 Identities = 115/285 (40%), Positives = 169/285 (59%), Gaps = 15/285 (5%)

Query: 1   MSAHPLLEIRDLSIAF--RNGGQQR-----QVVDQVSLSIEAGETLALVGESGSGKSVTA 53
           +   P+L++R L   F  R+G   R       V+ +S  +  GETL+LVGESGSGKS T 
Sbjct: 308 VEGEPILQVRGLVTRFPLRSGLFNRVTREVHAVENISFDLWPGETLSLVGESGSGKSTTG 367

Query: 54  LSVLRLLPSPPVVYLHGDILFAGESLLNASEQRLRQVRGDRIAMIFQEPMVSLNPLHTIE 113
            ++LRL+ S       G+I+F G+ +   S  +L+ +R D I  IFQ+P  SL+P  T+ 
Sbjct: 368 RALLRLVESR-----QGEIIFNGQRIDTLSAGKLQPLRRD-IQCIFQDPYASLDPRQTVG 421

Query: 114 KQLAEVLSLHRGMRRDAARGEIVGCLERVGIRQAARRLADFPHQLSGGERQRVMIAMALL 173
             + E L +H   + DAA   +   LERVG+R        +PH+ SGG+RQR+ IA AL 
Sbjct: 422 YSIMEPLRIHGLGQGDAAAKRVAWLLERVGLRP--EHAWRYPHEFSGGQRQRICIARALA 479

Query: 174 TQPDLLIADEPTTALDVTVQAQILDLLNELKQELNMGLLFITHNLNIVRRLADRVAVMQA 233
             P ++IADE  +ALDV+V+ QI++LL +L++E+ +  LFI+H++ +V R++ RVAVM  
Sbjct: 480 LNPKVIIADEAVSALDVSVRGQIINLLLDLQREMGIAYLFISHDMAVVERISHRVAVMYL 539

Query: 234 GRCVEQNRTRELFSAPQHPYTRQLLNAEPTGEAPPLEPTASTLLD 278
           G+ VE    R +F  PQHPYTR+L+ A P  +     P    L D
Sbjct: 540 GQIVEMGPRRAVFENPQHPYTRKLMAAVPVADPSRHRPRRVLLSD 584