Pairwise Alignments

Query, 601 a.a., DEAD/DEAH box helicase from Dickeya dianthicola ME23

Subject, 586 a.a., putative ATP-dependent DNA or RNA helicase from Escherichia coli BL21

 Score =  932 bits (2408), Expect = 0.0
 Identities = 448/601 (74%), Positives = 512/601 (85%), Gaps = 15/601 (2%)

Query: 1   MSFTLRPYQQEAVDATLAYFRQHTAPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVRE 60
           M FTLRPYQQEAVDATL +FR+H  PAVIVLPTGAGKSLVIAELARLARGRVLVLAHV+E
Sbjct: 1   MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKE 60

Query: 61  LVEQNHAKYCALGLQADIFAAGLNQHDSEGKVVFGSVQSVARHPDKFDDAFSLLIVDECH 120
           LV QNHAKY ALGL+ADIFAAGL + +S GKVVFGSVQSVAR+ D F   FSLLIVDECH
Sbjct: 61  LVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECH 120

Query: 121 RISDDENSQYQQIIQQAQQANPQLRLLGLTATPYRLGRGWIYQYHYHGMIRGDDGCLFRD 180
           RI DDE SQYQQI+    + NP LRLLGLTATP+RLG+GWIYQ+HYHGM+RGD+  LFRD
Sbjct: 121 RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRD 180

Query: 181 CIYELPLRYMIRHGFLVPPERLDMPVVQYDFSQLAARSDGLFNNGLFNNGLFNNGRFSDV 240
           CIYELPLRYMI+HG+L PPERLDMPVVQYDFS+L A+S+GLF               S+ 
Sbjct: 181 CIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLF---------------SEA 225

Query: 241 ELNRELKRQQRVTPHIVRQITEYAANRRGVMIFAATVEHAREVAGLLPASEAALISGETP 300
           +LNRELK+QQR+TPHI+ QI E+AA R+GVMIFAATVEHA+E+ GLLPA +AALI+G+TP
Sbjct: 226 DLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTP 285

Query: 301 APQRDALIAAFKQQQLRYLVNVSVLTTGFDAPHVDVIAILRPTESVSLYQQIIGRGLRLF 360
             +RD LI  FK Q+ RYLVNV+VLTTGFDAPHVD+IAILRPTESVSLYQQI+GRGLRL 
Sbjct: 286 GAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLA 345

Query: 361 PGKSDCLILDYAGNPFDLYTPEVGHSKPHSDSQPVQVFCPQCGFANLFWGKCTDDGSVIE 420
           PGK+DCLILDYAGNP DLY PEVG  K  SD+ PVQVFCP CGFAN FWGK T DG++IE
Sbjct: 346 PGKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIE 405

Query: 421 HYGRRCQGWQADEQGRRQQCDYRFRFKSCPHCGAENDIAARRCQSCEAVLVDPDDMLKAA 480
           H+GRRCQGW  D+ G R+QCD+RFRFK+CP C AENDIAARRC+ C+ VLVDPDDMLKAA
Sbjct: 406 HFGRRCQGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAA 465

Query: 481 LKLKDALVLRCSGMNLQHGADAKGEWLRITYYDEDGADVSERFRLHTAAQRSAFTHVFLR 540
           L+LKDALVLRCSGM+LQHG D KGEWL+ITYYDEDGADVSERFRL T AQR+AF  +F+R
Sbjct: 466 LRLKDALVLRCSGMSLQHGHDEKGEWLKITYYDEDGADVSERFRLQTPAQRTAFEQLFIR 525

Query: 541 AHQRAPGVPFQWQRADDVVAQQALLRAPDFVVARLQGKFWQVREKIFDYQGRYRRAHELR 600
            H R PG+P +W  A D++AQQALLR PDFVVAR++G++WQVREK+FDY+GR+R AHELR
Sbjct: 526 PHTRTPGIPLRWITAADILAQQALLRHPDFVVARMKGQYWQVREKVFDYEGRFRLAHELR 585

Query: 601 G 601
           G
Sbjct: 586 G 586