Pairwise Alignments

Query, 670 a.a., excinuclease ABC subunit B from Dickeya dianthicola ME23

Subject, 673 a.a., exision nuclease of nucleotide excision repair, DNA damage recognition component from Escherichia coli BL21

 Score = 1161 bits (3003), Expect = 0.0
 Identities = 589/673 (87%), Positives = 627/673 (93%), Gaps = 3/673 (0%)

Query: 1   MNKAFKLHSDFKPAGDQPEAIRRLEDGLEDGLAHQTLLGVTGSGKTFTVANVIADLNRPT 60
           M+K FKL+S FKP+GDQPEAIRRLE+GLEDGLAHQTLLGVTGSGKTFT+ANVIADL RPT
Sbjct: 1   MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60

Query: 61  MVLAPNKTLAAQLYGEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120
           MVLAPNKTLAAQLYGEMK FFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE
Sbjct: 61  MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120

Query: 121 QMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLAELQ 180
           QMRLSATKA+LERRDVVVVASVSAIYGLGDPDLYLKMMLHLT GM+IDQRAILRRLAELQ
Sbjct: 121 QMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180

Query: 181 YARNDQAFARGTFRVRGEIIDIFPAESEDIALRVELFDEEVERLSLFDPLTGHIVQTVPR 240
           YARNDQAF RGTFRVRGE+IDIFPAES+DIALRVELFDEEVERLSLFDPLTG IV T+PR
Sbjct: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240

Query: 241 YTIYPKTHYVTPRERILQAMEEIKVELADRRQVLLAGNKLLEEQRLAQRTTFDLEMMNEL 300
           +TIYPKTHYVTPRERI+QAMEEIK ELA RR+VLL  NKLLEEQRL QRT FDLEMMNEL
Sbjct: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300

Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQLGGMYRGDRARKET 360
           GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV+DESHVTIPQ+GGMYRGDRARKET
Sbjct: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360

Query: 361 LVEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGGEVIDQVVRPTGLLD 420
           LVEYGFRLPSALDNRP+KFEEFEALAPQTIYVSATPGNYELEKSGG+V+DQVVRPTGLLD
Sbjct: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420

Query: 421 PQLEVRPVTTQVDDLLSEIRKRAVINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480
           P +EVRPV TQVDDLLSEIR+RA INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI
Sbjct: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480

Query: 481 DTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540
           DTVER+EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
Sbjct: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540

Query: 541 RAARNLNGKAILYADRITPSMERAMNETQRRREKQQAYNEQHGIVPQGLNKKIGDLLQIG 600
           RAARN+NGKAILY D+ITPSM +A+ ET+RRREKQQ YNE+HGI PQGLNKK+ D+L +G
Sbjct: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600

Query: 601 QS-ANGRGKGRGKK--AAEPAAQYQQLSPKALDQKIRELESQMLTHAQNLEFEEAARLRD 657
           Q+ A  + KGRGK     EP      +SPKAL QKI ELE  M+ HAQNLEFEEAA++RD
Sbjct: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660

Query: 658 EIHALREQFIAAS 670
           ++H LRE FIAAS
Sbjct: 661 QLHQLRELFIAAS 673