Pairwise Alignments

Query, 310 a.a., ABC transporter permease subunit from Dickeya dianthicola ME23

Subject, 311 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  187 bits (476), Expect = 2e-52
 Identities = 110/312 (35%), Positives = 174/312 (55%), Gaps = 12/312 (3%)

Query: 4   YFIKRLFMTLPLAVVMSFVAFSLLNLVPSDPAEVALRVNDIVPTDEAIQLMHHELGLDRP 63
           Y ++R   TLP+  V++ V F L++L P DPA  AL   D+  T++ I+ +   LGL+ P
Sbjct: 3   YIVRRFLSTLPVMAVVAVVVFLLIHLSPGDPA--ALIAGDLATTED-IEKLRATLGLNLP 59

Query: 64  FFPRYVLWLWKVLHGDFGTSFITRQPVWHVFMQALPATLYLAAVSLLMIVTLSLTLGIAC 123
            + ++ LWL K+  GD GTS  T+ PV  +  Q L  T+ +AA+++L+ + +S+ LG   
Sbjct: 60  LWQQFTLWLGKLFTGDLGTSIFTQVPVAQLLGQRLEPTVSIAALTMLITLVVSVPLGTLA 119

Query: 124 ALTENTPFDKAVRSVVFLTVAIPNYWIGLLLMWGLAVNMDLFPV--------GGMQEERS 175
           A    +  D+ V     L  ++P + +G LL++  A+ +  FPV        G  +  RS
Sbjct: 120 AYRAGSWIDRLVMLFAVLAFSVPVFLVGYLLVYSFAIQLPWFPVQGYVRLADGAGEWLRS 179

Query: 176 VILPSCTLMLGYIGTYIRLIRGSMIGNLQQNYVLYARARGLPAPLIIGKHVLANSLHAAL 235
           ++LP   L L YI    R+ R +++  L ++Y+  ARA+GL    ++G H L N+     
Sbjct: 180 LVLPCVNLALVYIALVTRMTRATVLEVLHEDYIRTARAKGLGVLPVLG-HALRNAAIPIA 238

Query: 236 VAIGMSIPKLIAGTVVIENIFAWPGVGRLCLSAIFNRDYPMIQAYMLLMALLFLGFNFLT 295
             IG  I  LI G VV E +FA PGVGRL + ++   DYP+IQ+ +LL A +++  N L 
Sbjct: 239 TTIGAGIALLIGGVVVTETVFAIPGVGRLVIDSVQRHDYPVIQSVLLLSAGVYVLINLLI 298

Query: 296 DVLQAKLDPRIR 307
           D+     DPRI+
Sbjct: 299 DLSYRLFDPRIQ 310