Pairwise Alignments

Query, 512 a.a., ABC transporter substrate-binding protein from Dickeya dianthicola ME23

Subject, 537 a.a., putative transport periplasmic protein (VIMSS) from Escherichia coli BW25113

 Score =  153 bits (387), Expect = 1e-41
 Identities = 139/514 (27%), Positives = 219/514 (42%), Gaps = 61/514 (11%)

Query: 16  IAQAADLTIGLASSTTSMDPQFYVGGANSAMARNLFDGLVNQNEKQHITPALAVSWKAID 75
           +A+  +L   +     S+DP   VG     + R+LF+GLVNQNEK  I P +A  WK+ D
Sbjct: 31  LAEKQELVRHIKDEPASLDPAKAVGLPEIQVIRDLFEGLVNQNEKGEIVPGVATQWKSND 90

Query: 76  DTTWQFRLRPNVKFHDGADVNARDVVASVKRVALAAKNSPSAYTPYVADISE-------- 127
           +  W F LR N K+ DG  V A+D V S +R+      SP A+   +A I+         
Sbjct: 91  NRIWTFTLRDNAKWADGTPVTAQDFVYSWQRLVDPKTLSPFAWFAALAGINNAQAIIDGK 150

Query: 128 -------IREIDPLTVEIKTKVPAALLLNNLSRIAILPARLVDQPTDVLNGGK-----DV 175
                  +  +D  T++I+   P    +N  +  A  P     Q  +V +G +     ++
Sbjct: 151 ATPDQLGVTAVDAHTLKIQLDKPLPWFVNLTANFAFFPV----QKANVESGKEWTKPGNL 206

Query: 176 IGTGPFKFVSYTPDDKVVLSRNDHYW-GGKAEWDTVTLRVIKNSSARIAALLSGDVDMIE 234
           IG G +       ++K+V+  N HYW   K     VT   I   SA     L+GD+D+ E
Sbjct: 207 IGNGAYVLKERVVNEKLVVVPNTHYWDNAKTVLQKVTFLPINQESAATKRYLAGDIDITE 266

Query: 235 SVPTADRAAIARQQAFATESVPGNRILYLHPDQDRDVSPFAKGDDGKNPLRKAEVRQAMS 294
           S P               + +PG   +Y  P        F   +  K P     VR A+S
Sbjct: 267 SFP-------KNMYQKLLKDIPGQ--VYTPPQLGTYYYAF---NTQKGPTADQRVRLALS 314

Query: 295 LAINRDALVQRILDGQGLPSSQLVPQGYPGYSANIPAPVYDL------AQAKQKLTAAGY 348
           + I+R  + +++L     P+    P    G++   P+P   +      AQAK  L+AAGY
Sbjct: 315 MTIDRRLMTEKVLGTGEKPAWHFTPDVTAGFTPE-PSPFEQMSQEELNAQAKTLLSAAGY 373

Query: 349 ----PNGFTLTFHASNDRYPNDAKIAQALGQMFSQ-AGIKTEVVTMPGNVYFAKAAQREF 403
               P   TL ++ S     N  KIA A+  M+ +  G+  ++       Y        F
Sbjct: 374 GPQKPLKLTLLYNTSE----NHQKIAIAVASMWKKNLGVDVKLQNQEWKTYIDSRNTGNF 429

Query: 404 SLVMGGAAIETGEASGVLGPLLETFGPNAGQGNRGRYSNAEFDKLLNQARATLDEPQRDA 463
            ++      +  E S  L  L  T       GN  R++N  +DK+L QA        R+A
Sbjct: 430 DVIRASWVGDYNEPSTFLTLLTSTH-----SGNISRFNNPAYDKVLAQASTENTVKARNA 484

Query: 464 LLQQATELAVKEQGVIPLLFLSNTWAMK---KGY 494
               A ++ +++  + P+   +N   +K   KGY
Sbjct: 485 DYNAAEKILMEQAPIAPIYQYTNGRLIKPWLKGY 518