Pairwise Alignments

Query, 1016 a.a., efflux RND transporter permease subunit from Dickeya dianthicola ME23

Subject, 1052 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

 Score =  819 bits (2116), Expect = 0.0
 Identities = 440/1031 (42%), Positives = 640/1031 (62%), Gaps = 23/1031 (2%)

Query: 4    FNLSDWALEHRSLVWYFIIISAVIGFFSYQELGREEDPAFTIKTMVIQAQWPGATAEEMT 63
            FNLS WAL+H  L  Y +++  V+G F+Y +LG++EDP FT + MV++  WPGATA+++ 
Sbjct: 15   FNLSKWALDHAPLTRYLMVVLMVLGAFAYFQLGQDEDPPFTFRAMVVKTYWPGATAQQVA 74

Query: 64   NQVTDRIEKKLQEIDTLDHTRSQTTAGQTIIFVDLKEDTPSKEVRAVWQRVRNMMADIQG 123
             QVTD++E+ LQE    D  RS +  G++ I  ++K+ + S EV  VW  VR  + D++ 
Sbjct: 75   EQVTDKLERTLQEAPYADKIRSYSKPGESQIIFNIKDSSKSTEVANVWYTVRKKIGDMRA 134

Query: 124  NFPVGIQGPFLNDRFDDVFGNIYAFTRDGISQRQLRDYVNDVQKKVLTIPNVGRVEILGA 183
              P G+QGPF ND F DV+G IYA   +G S  +L+   +DV++++L + +V +V+  G 
Sbjct: 135  TLPAGVQGPFFNDDFGDVYGVIYALESEGFSYAELKTLADDVRQQLLRVKDVAKVDQFGV 194

Query: 184  QDEVIYLEFNPRKSAELGVSRSDVIAALQAQNAVTASGFMEAGSDRIALRVDGGFASEQS 243
            QDE +Y+E + ++ A+LG+  + V+  L +QNAV ++G + +  D + +RV G F S   
Sbjct: 195  QDEKVYIEISQKRLAQLGLDFNAVLQQLGSQNAVESAGSISSPQDVVQVRVAGQFTSVDQ 254

Query: 244  LRHINLR-INNRFFPLTDVVNITRGYVDPPTSLFRYDGKPAIALAVGIKSGSNLLVFGHA 302
            LR + +R  +     L D+ +I RGYVDPP     + GK  IAL V +  G +++  G A
Sbjct: 255  LRDMPIRGSSGSQIKLGDIADIHRGYVDPPAVKVHHQGKEVIALGVSMAKGGDIIALGKA 314

Query: 303  LDRTIDHIMHDLPAGVSVSKVSDQPAIVDEAVSGFTRALFEAVVIVLAISFISLG----- 357
            L  T   I   LPAGV +++V DQP  V  +V+ F   L EAV IVLA+S ISLG     
Sbjct: 315  LKATTATIDKRLPAGVKLAQVQDQPVSVASSVNEFVGVLIEAVAIVLAVSIISLGLHKGG 374

Query: 358  -------VRAGLVVAISIPLVLAITFLVMYYSGISLQRISLGALIIALGLLVDDAMIATE 410
                   +R GLVVAI+IPLVLA+TFL M Y GI L +ISLG+LIIALGLLVDDA+IA E
Sbjct: 375  RFGWYIDMRPGLVVAITIPLVLAVTFLAMNYFGIGLHKISLGSLIIALGLLVDDAIIAVE 434

Query: 411  MMVARLEMGDSLRKAATHVYTSTAFPMLTGTLVTVASFIPVGFNASNAGEFLFTLFVVIA 470
            MMV ++E G    +AAT+ Y  TA PMLTGTL+T A F+P+G   S  GE+ F +F V  
Sbjct: 435  MMVRKMEEGYDKARAATYAYDVTAKPMLTGTLITAAGFLPIGLAKSVTGEYTFAIFAVTV 494

Query: 471  VSLIVSWVVAVLIAPLLGVALLP-KTITKQAEHQSRTD----HAFSRMLQYCLRHRWLTI 525
            ++L++SW+V+V   P LG  LL  K     A      D    +AF R + +C+ HRW TI
Sbjct: 495  IALVLSWIVSVYFVPYLGTLLLKVKAHDPDAPPHEMFDSAFYNAFRRAVNWCVEHRWATI 554

Query: 526  GSACAAFIVSVLCMSLVQHQFFPSSDRPELIVDWNLPQNGSIEETSRQMAQFEQEKLQNN 585
            G+    F + ++ M  VQ QFFP S RPE++VD   P+ G+    + ++A+  +++    
Sbjct: 555  GATVLIFALGIVGMGKVQQQFFPDSSRPEILVDIWFPE-GTSFAANEEVAKRVEKRFMEE 613

Query: 586  PDVDHWSSYIGTGAPRFILSFDVQPSSVSLGQMVIVAKDIKTRDRLQKEYRAYLAHTFPG 645
              V   S++IG+G PRF L  D      ++ Q++++AKD+K R+ L+ +    LA  FP 
Sbjct: 614  AGVSTVSTWIGSGVPRFYLPLDQVFPQTNVSQLIVLAKDLKVRETLRLKLPQLLAQEFPE 673

Query: 646  TDAYVKLLDVGPPVGKPVQYRVAGPDIQTVRTEAHKLAAVIGQNPSLTNLAFDWNEPARV 705
                VKLL  GPPV  PVQ+RV GPD   +R  A ++ AV+  NP++  +  +WNE  +V
Sbjct: 674  VRGRVKLLPNGPPVAYPVQFRVIGPDPALLRGHADEVKAVLRDNPNMRGVNDNWNESVKV 733

Query: 706  VKVNVLQDKARQMGVSSQAIAQALNGLTGGEVVTQVRDDIYLINVLWRGQAKDRGSVDAL 765
            +++ V Q KAR +GV+SQAIAQA   +  G  V Q R++  LI+++ R    +R ++  +
Sbjct: 734  IRLEVDQAKARALGVTSQAIAQASKTMFSGTTVGQYRENDLLIDIVLRQAPDERQAISDI 793

Query: 766  LDLQLDGNNGRQVPLSSVATFSYQLEQPTIWRRDRAAAITLKAGVSGDIQPATIVQALEP 825
             +  +  ++GR +PL+ +A   +  E   +WR +R  AIT++  V   +Q AT+   L P
Sbjct: 794  GNAYIPTSSGRSIPLTQIAKPVFTWEPGVMWRENRDYAITVQGDVIEGLQGATVTTQLLP 853

Query: 826  NVEVLRQSLPQ----GYTIETGGAVEESAKAQAPIVKVVPVMLFVIATILMIQLQSFHRL 881
             +  L          GY +E  GA EES+K  A IV  VP+MLF++ T+LM+QL SF R 
Sbjct: 854  KLRELEAGWAAAGQGGYRVEVAGAAEESSKGSASIVAGVPIMLFLVFTLLMLQLHSFSRS 913

Query: 882  FLVFSVAPLALIGVVAALLLSHAPLGFVAILGVLALVGILIRNSVILVVHIDTLRAEGIS 941
             LVF   P+ + GV  ALL+ + P GFVA+LGV+AL+G++ RN+VIL+  I+  RA G+ 
Sbjct: 914  LLVFITGPMGIAGVAGALLVLNRPFGFVALLGVIALMGMIQRNAVILIDQIEIDRAAGVP 973

Query: 942  PWQAVVQATEHRMRPIMLTAAAATLALIPIAREIFWGPMAYAMMGGIIVGTVLTLLFLPA 1001
             W A+V++   R+RPI+LTAAAA LA+IP++R +FWGPMA A+MGG+IV TVLTLL LPA
Sbjct: 974  AWDAIVESAVRRLRPIVLTAAAAVLAMIPLSRSVFWGPMAVAIMGGLIVATVLTLLALPA 1033

Query: 1002 LYVTWFNIPRE 1012
            +Y   F + RE
Sbjct: 1034 MYAAAFRVKRE 1044