Pairwise Alignments

Query, 615 a.a., protein translocase subunit SecD from Dickeya dianthicola ME23

Subject, 535 a.a., Protein translocase subunit SecD from Xanthobacter sp. DMC5

 Score =  316 bits (809), Expect = 2e-90
 Identities = 200/554 (36%), Positives = 316/554 (57%), Gaps = 46/554 (8%)

Query: 84  QLRAREVLLN-ALGEKFVVALNLAPAT----PTWLRMLGAEPMKLGLDLRGGVHFLMEVD 138
           +L+   +L+  A+G  F V   L+P      P+WL    +  + LGLDL+GG H L+EVD
Sbjct: 6   RLKTTAILVTIAIGMLFAVPNVLSPGMLDHLPSWL---ASSRVTLGLDLQGGSHILLEVD 62

Query: 139 MDTALGKLQEQTMDSLRSDLREKGIQYASVRKSDNYGVDILFRDGQLRDDAVNYL----- 193
                 +  EQ  D +R  LR++ I Y+++   D   V +  RD      AV  L     
Sbjct: 63  GPALRRERTEQLRDEVRRVLRDQKIGYSNLALRDT-SVTLRLRDPNDTQKAVTELRKLAA 121

Query: 194 ---------APRHRDLVLNSSGSDTLRAVMSDARLGEAREYAVQQNINILRNRVNQLGVA 244
                    +    DL ++S    T+   ++DA L      AV Q+I I+R R++QLG  
Sbjct: 122 PVTNALFGNSSGEMDLTVSSGSDGTVTLQLTDAGLTAKMRSAVDQSIEIIRRRIDQLGTV 181

Query: 245 EPLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNSNVDPVALTNGRVPGDTEV 304
           EP +QRQG DRI+V++PG+QD  R K +LG TA L FR+V+ ++ P     GR P ++EV
Sbjct: 182 EPNIQRQGLDRILVQVPGLQDPQRLKNLLGQTAKLSFRMVDQSMSPQQALEGRAPPESEV 241

Query: 305 MNMRDGGPVALYKRVILTGDHITDSTSGNDEYNR-PQVNISLDSAGGNMMSNFTKDNIGK 363
           +  +DG P  + K+V ++G+ + D+  G D+ +R P V+   ++ G    +  +++++G+
Sbjct: 242 LKGQDGQPYLVEKQVRVSGEDLVDAQPGFDQNSREPIVSFRFNNNGAKRFAAVSQESVGR 301

Query: 364 PMATLFVEYKDSGKKDANGRAVLEKQEEVINVATIQSR-LGNSFRITGINNPNEARQLSL 422
           P A                  VL+ Q  VI+   I+   LG + +I+G     +A  L++
Sbjct: 302 PFA-----------------IVLDNQ--VISAPVIREPILGGAGQISGSFTVQQANDLAI 342

Query: 423 LLRAGALIAPIQIVEERTIGPTLGMQNITQGLEACLAGLAVSILFMIFFYKKFGMIATSA 482
           LLRAGAL AP+++VEERT+GP+LG  +I  G  A      +  +FM+  Y  FG+ A  A
Sbjct: 343 LLRAGALPAPLKVVEERTVGPSLGADSIQAGKTAAYVAGGLVTVFMLAVYGLFGLFALIA 402

Query: 483 LLLNLVLVVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAI 542
           L ++++L+  + S+L GATLT+PGIAG+VLT+ +AVD+NV+I ER+++E   GR+   AI
Sbjct: 403 LAVHIILMFSLQSVL-GATLTLPGIAGVVLTIGMAVDSNVVIFERMRDEAREGRSAISAI 461

Query: 543 DEGYRGAFSSIFDANVTTLIKVLILYAI-GTGSIKGFAITTGIGVATSMFTAIVGTRAIV 601
           D+G+  A  +I DAN+T+L   +IL+ + G+G ++GFA+T  +G+ T+MFTA   TR ++
Sbjct: 462 DKGFVNALGTILDANITSLATAVILFLMGGSGPVRGFAVTYILGLLTTMFTAYTLTRLMI 521

Query: 602 NLLYGGKRIKKLSI 615
                 +R  KL I
Sbjct: 522 AYWVKWRRPAKLPI 535



 Score = 28.5 bits (62), Expect = 8e-04
 Identities = 59/290 (20%), Positives = 107/290 (36%), Gaps = 52/290 (17%)

Query: 9   KYLMLIVTIVVGLLYALPNLY-------------------------GEDPAIQVTG-ARG 42
           K   ++VTI +G+L+A+PN+                          G    ++V G A  
Sbjct: 8   KTTAILVTIAIGMLFAVPNVLSPGMLDHLPSWLASSRVTLGLDLQGGSHILLEVDGPALR 67

Query: 43  TAASESTLVQIQNVLKEQNIASKSIALENGAILARF-STSDVQLRAREVLLNALGEKFVV 101
              +E    +++ VL++Q I   ++AL + ++  R    +D Q    E  L  L      
Sbjct: 68  RERTEQLRDEVRRVLRDQKIGYSNLALRDTSVTLRLRDPNDTQKAVTE--LRKL------ 119

Query: 102 ALNLAPATPTWLRMLGAEPMKLGLDLRGGVHFLMEVDM-DTALGKLQEQTMDSLRSDLRE 160
                 A P    + G    ++ L +  G    + + + D  L       +D     +R 
Sbjct: 120 ------AAPVTNALFGNSSGEMDLTVSSGSDGTVTLQLTDAGLTAKMRSAVDQSIEIIRR 173

Query: 161 KGIQYASVRKS-DNYGVD-ILFRDGQLRDDAVNYLAPRHRDLVLNSSGSDTLRAVMSDAR 218
           +  Q  +V  +    G+D IL +   L+D       P+    +L  +   + R V     
Sbjct: 174 RIDQLGTVEPNIQRQGLDRILVQVPGLQD-------PQRLKNLLGQTAKLSFRMVDQSMS 226

Query: 219 LGEAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTAR 268
             +A E        +L+ +  Q  + E  V+  G D +V   PG    +R
Sbjct: 227 PQQALEGRAPPESEVLKGQDGQPYLVEKQVRVSGED-LVDAQPGFDQNSR 275