Pairwise Alignments

Query, 674 a.a., DNA topoisomerase III from Dickeya dianthicola ME23

Subject, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

 Score =  123 bits (308), Expect = 4e-32
 Identities = 141/572 (24%), Positives = 232/572 (40%), Gaps = 61/572 (10%)

Query: 87  ITRLLKQSDEVVIATDADREGEVIARELLEYCRFNGV-VSRLWLSALDEASVRKALANIR 145
           + RL K +D + +ATD DREGE IA  L E    +     R+  + + + ++++A +  +
Sbjct: 102 LRRLAKDADTIYLATDLDREGEAIAWHLREAIGGDDTRYKRVVFNEITKKAIQEAFS--Q 159

Query: 146 PGNETENLYYAGLGRGRADWLIGMNISRLYTLKARELGYDGVLSVGRVQTPALALVVNRD 205
           PG    +   A   R   D ++G  +S L   K         LS GRVQ+ A+ LVV R+
Sbjct: 160 PGELDIDRVNAQQARRFLDRVVGYMVSPLLWAKIAR-----GLSAGRVQSVAVKLVVERE 214

Query: 206 RLIASFVPKPYFQVNVKLESGGVVFPAEWVAAAAYTDGER-RCVNQAVAEQVRKLCLTVG 264
           R I +F+P+ Y++++  L   G    A+     A   GE  + +N+A A    +      
Sbjct: 215 REIRAFIPEEYWEIHADL---GTAKNAKVRFEVAREKGEAFKPLNEAQAMAALEKLKASS 271

Query: 265 KAVILDVEKKREKIPAPLAFSLGVLQQVCAERFGYSPQQVLDTAQALYETHKATTYPRTD 324
            +V+   ++     P+   F    LQQ  + R G+  ++ +  AQ LYE     TY RTD
Sbjct: 272 YSVVKREDRPTSSKPS-APFITSTLQQAASNRLGFGVKKTMMMAQRLYEA-GYITYMRTD 329

Query: 325 CGYLPESMLSEVPHVLSAL--QQSDPSLAPVIASIDPSFRSRIWDDKKITAHHAIIPT-- 380
              L    L      +     +Q  P    V  S + +            AH AI P+  
Sbjct: 330 STNLSADALDMARSYIEREFGKQYLPEAPLVYGSKEGAQE----------AHEAIRPSDV 379

Query: 381 -PHKCNLAGMNEAERNVYTLIRTHYLAQFMPLLEMDVTRASFNIGGQLFRTSGRVTVVPG 439
             H   L+GM      +Y LI   +LA  MP  +   T  +   G    R  GR+    G
Sbjct: 380 NTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYLSTSVTVAAGDFELRAKGRILKFDG 439

Query: 440 WKTLFGQAAASDSDERDDEAAAVSLPPLTKDAVCGIRGAELKALKTKPPQPYSFKTLIAA 499
           +  +  Q +    D+         LP +       ++G  LK ++  P Q +   T   A
Sbjct: 440 YTRVLPQQSKPGEDD--------VLPEM-------VQGEALKLIQIDPSQHF---TKPPA 481

Query: 500 MMNAAGLVDDPALKKVLRDNAGLGTEATRAGILDVLMKRGFLIKKGNHLHA---SDTACD 556
               A LV +        +  G+G  +T A I+  +  RG++       ++    D   +
Sbjct: 482 RFTEASLVKE-------MEKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTE 534

Query: 557 LVDALPAALTQVGMTALWEQALDDIAAGKMTLDSFVDRQLRWVNQLVEQGKQQAFTIRVP 616
            +    + L   G TA  E+ LDD+A G+    + +D      ++ ++  +     +R  
Sbjct: 535 RLSESFSNLMDYGFTADMEENLDDVAQGERDWKNVLDEFYGDFSKKLQTAESSEDGMRAN 594

Query: 617 E----RPKCPLCGGRTRLRKGPNGTFYGCENY 644
           +       C  CG    +R    G F GC  Y
Sbjct: 595 QPTMTNIPCKECGRPMMIRTASTGVFLGCSGY 626



 Score = 32.3 bits (72), Expect = 1e-04
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 6/48 (12%)

Query: 603 VEQGKQQAFTIRVPERP--KCPLCGGRTRLRKGPNGTFYGCENYPTCK 648
           +E+G    + I+  E P  +C  CG   +L+ G  G F+GC N P CK
Sbjct: 697 IEEGN---YRIKGYEGPSLECDKCGSEMQLKTGRFGKFFGCTN-PACK 740