Pairwise Alignments

Query, 674 a.a., DNA topoisomerase III from Dickeya dianthicola ME23

Subject, 649 a.a., DNA topoisomerase III (EC 5.99.1.2) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  417 bits (1073), Expect = e-121
 Identities = 252/618 (40%), Positives = 341/618 (55%), Gaps = 20/618 (3%)

Query: 1   MRLFLCEKPSQGRDIAAVLGASKR-GQGFLS-GPDTVVTWAVGHLLENAMPELYGEQYGK 58
           MRLF+ EKPS GR IA VL    R G GF+  G   VVTW +GHLLE A P+ Y  +Y +
Sbjct: 1   MRLFIAEKPSLGRAIADVLPKPHRKGDGFIECGNGQVVTWCIGHLLEQAQPDAYDSRYAR 60

Query: 59  PWRLDVLPLLPQKWQMVVKKDTADQFAVITRLLKQSDEVVIATDADREGEVIARELLEYC 118
            W L  LP++P+KWQ+  +     Q  VI R L Q+ E++ A D DREG+++  E+L+Y 
Sbjct: 61  -WNLADLPIVPEKWQLQPRPSVTKQLNVIKRFLHQAGEIIHAGDPDREGQLLVDEVLDYL 119

Query: 119 RFNGV----VSRLWLSALDEASVRKALANIRPGNETENLYYAGLGRGRADWLIGMNISRL 174
           +        V R  ++ L+  +V +A+  +R  ++   L  + L R RADWL G+N++R 
Sbjct: 120 QLPAEKRQQVRRCLINDLNPQAVERAIDRLRANSDFVPLCVSALARARADWLYGINMTRA 179

Query: 175 YTLKARELGYDGVLSVGRVQTPALALVVNRDRLIASFVPKPYFQVNVKLES-GGVVFPAE 233
           YT+  R  GY GVLSVGRVQTP L LVV RD  I +FV K +F+V   + +     F A 
Sbjct: 180 YTILGRNAGYQGVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFEVKAHIVTPADERFTAI 239

Query: 234 WVAAAA---YTDGERRCVNQAVAEQVRKLCLTVGKAVILDVEKKREKIPAPLAFSLGVLQ 290
           W  + A   Y D E R +++ +AE V    +    A++     KRE   APL FSL  LQ
Sbjct: 240 WQPSEACEPYQDEEGRLLHRPLAEHVVNR-INGQPALVTSYNDKRESESAPLPFSLSTLQ 298

Query: 291 QVCAERFGYSPQQVLDTAQALYETHKATTYPRTDCGYLPESMLSEVPHVLSALQQSDPSL 350
              A+RFG S Q VLD  Q LYETHK  TYPR+DC YLPE   +    V++A+    P L
Sbjct: 299 IEAAKRFGLSAQNVLDICQKLYETHKLITYPRSDCRYLPEEHFAGRQAVMNAISVHAPDL 358

Query: 351 APVIASIDPSFRSRIWDDKKITAHHAIIPTPHKCNLAGMNEAERNVYTLIRTHYLAQFMP 410
            P    ++P  R+R WDDKK+ AHHAIIPT    ++  + E E  VYTLI   YL QF P
Sbjct: 359 LPQPV-VNPDTRNRCWDDKKVDAHHAIIPTARSSSVH-LTENEAKVYTLIARQYLMQFCP 416

Query: 411 LLEMDVTRASFNIGGQLFRTSGRVTVVPGWKTLFGQAAASDSDERDDEAAAVSLPPLTKD 470
                       I    F    R     GW+TL G      S ERD+E     LP + K 
Sbjct: 417 DAVFRKCVIELEIAKGKFVAKARFLAEAGWRTLLG------SKERDEENDGTPLPVVAKG 470

Query: 471 AVCGIRGAELKALKTKPPQPYSFKTLIAAMMNAAGLVDDPALKKVLRDNAGLGTEATRAG 530
                   E+   +T+PP+ ++  TL++AM   A  V D  LKK+LR   GLGTEATRAG
Sbjct: 471 DELLCEKGEVVERQTQPPRHFTDATLLSAMTGIARFVQDKDLKKILRATDGLGTEATRAG 530

Query: 531 ILDVLMKRGFLIKKGNHLHASDTACDLVDALPAALTQVGMTALWEQALDDIAAGKMTLDS 590
           I+++L KR FL KKG ++H++D    L+ +LP    +  MTA WE  L  I+  +     
Sbjct: 531 IIELLFKRSFLTKKGRYIHSTDAGKALIHSLPEMAARPDMTAHWESVLTQISEKQCRYQD 590

Query: 591 FVDRQLRWVNQLVEQGKQ 608
           F+   +  + QL+EQ K+
Sbjct: 591 FMQPLVGTLYQLIEQAKR 608