Pairwise Alignments

Query, 674 a.a., DNA topoisomerase III from Dickeya dianthicola ME23

Subject, 865 a.a., type I DNA topoisomerase from Escherichia coli ECRC62

 Score =  117 bits (293), Expect = 2e-30
 Identities = 143/575 (24%), Positives = 228/575 (39%), Gaps = 65/575 (11%)

Query: 87  ITRLLKQSDEVVIATDADREGEVIARELLEYCRFNGV-VSRLWLSALDEASVRKALANIR 145
           + +L +++D + +ATD DREGE IA  L E    +    SR+  + + + ++R+A    +
Sbjct: 96  LKQLAEKADHIYLATDLDREGEAIAWHLREVIGGDDARYSRVVFNEITKNAIRQAFN--K 153

Query: 146 PGNETENLYYAGLGRGRADWLIGMNISRLYTLKARELGYDGVLSVGRVQTPALALVVNRD 205
           PG    +   A   R   D ++G  +S L   K         LS GRVQ+ A+ LVV R+
Sbjct: 154 PGELNIDRVNAQQARRFMDRVVGYMVSPLLWKKIAR-----GLSAGRVQSVAVRLVVERE 208

Query: 206 RLIASFVPKPYFQVNVKLESGGVVFPAEWVAAAAYT---DGERRCVNQAVAEQVRKLCLT 262
           R I +FVP+ +++V+    +     P+    A   T   D   R VN+   +    L   
Sbjct: 209 REIKAFVPEEFWEVDASTTT-----PSGEALALQVTHQNDKPFRPVNKEQTQAAVSLLEK 263

Query: 263 VGKAVILDVEKKREKIPAPLAFSLGVLQQVCAERFGYSPQQVLDTAQALYETHKATTYPR 322
           V  +V+   +K     P    F    LQQ  + R G+  ++ +  AQ LYE     TY R
Sbjct: 264 VRYSVLEREDKPTTSKPG-APFITSTLQQAASTRLGFGVKKTMMMAQRLYEA-GYITYMR 321

Query: 323 TDCGYLPESMLSEVPHVLSALQQSDPSLAPVIASIDPSFRSRIWDDKKITAHHAIIPTPH 382
           TD   L +  ++ V   +     SD      +      + S+   +    AH AI P+  
Sbjct: 322 TDSTNLSQDAVNMVRGYI-----SDNFGKKYLPESPNQYASK---ENSQEAHEAIRPSDV 373

Query: 383 KC---NLAGMNEAERNVYTLIRTHYLAQFMPLLEMDVTRASFNIGGQLFRTSGRVTVVPG 439
                +L  M    + +Y LI   ++A  M   + D T  +   G    +  GR+    G
Sbjct: 374 NVMAESLKDMEADAQKLYQLIWRQFVACQMTPAKYDSTTLTVGAGDFRLKARGRILRFDG 433

Query: 440 WKTLFGQAAASDSDERDDEAAAVSLPPLTKDAVCGIRGAELKALKTKPPQPYSFKTLIAA 499
           W  +       D D          LP + K     +         TKPP  +S  +L+  
Sbjct: 434 WTKVMPALRKGDEDR--------ILPAVNKGDALTLVELTPAQHFTKPPARFSEASLVKE 485

Query: 500 MMNAAGLVDDPALKKVLRDNAGLGTEATRAGILDVLMKRGFLIKKGNHLHASDTACDLVD 559
           +                 +  G+G  +T A I+  +  RG++  +    +A      + D
Sbjct: 486 L-----------------EKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTD 528

Query: 560 ALP---AALTQVGMTALWEQALDDI----AAGKMTLDSFVD---RQLRWVNQLVEQGKQQ 609
            L      L     TA  E +LD +    A  K  LD F     +QL    +  E+G  +
Sbjct: 529 RLEENFRELMNYDFTAQMENSLDQVANHEAEWKAVLDHFFSDFTQQLDKAEKDPEEGGMR 588

Query: 610 AFTIRVPERPKCPLCGGRTRLRKGPNGTFYGCENY 644
              + V     CP CG +  +R    G F GC  Y
Sbjct: 589 PNQM-VLTSIDCPTCGRKMGIRTASTGVFLGCSGY 622