Pairwise Alignments

Query, 496 a.a., transcription termination/antitermination protein NusA from Dickeya dianthicola ME23

Subject, 493 a.a., transcription termination/antitermination L factor from Pseudomonas putida KT2440

 Score =  603 bits (1555), Expect = e-177
 Identities = 311/493 (63%), Positives = 384/493 (77%), Gaps = 3/493 (0%)

Query: 1   MNKEILAVVEAVSNEKAVPREKIFEALETALATATKKKYEQEIDVRVCIDRKTGDFDTFR 60
           M+KE+L VVE+VSNEK VP   IFEALE ALATATKK++E E+D+RV I+R TG ++TFR
Sbjct: 1   MSKEVLLVVESVSNEKGVPPGVIFEALEVALATATKKRFEDEVDLRVEINRHTGSYETFR 60

Query: 61  RWLVVNE--VTQPTREITLEAAQFEEPSMDLGGYIEDQIESVTFDRITTQTAKQVIVQKV 118
           RW VV+E  +  P  E  L+  +   P   +G  IE++IES+ F RI  QTAKQVIVQKV
Sbjct: 61  RWTVVDEADLDDPAIETWLDKIKDTHPEAKVGDVIEEKIESIEFGRIAAQTAKQVIVQKV 120

Query: 119 REAERAMVVDQFREQEGEIVTGVVKKVNRDNISLDLGSNAEAVIGREDMLPRENFRPGDR 178
           REAERA VVD +RE+ GEI++G VKKV RDN+ +DLG+NAEA++ RED++PRE FR G R
Sbjct: 121 REAERAQVVDAYRERVGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIIPRETFRVGVR 180

Query: 179 IRGVLYAVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 238
           +R +L  +R E RG QL +SR+ P+MLIELFRIEVPEI E +IE+ AA+RDPGSRAKIAV
Sbjct: 181 LRALLKEIRTENRGPQLILSRTAPQMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAV 240

Query: 239 KTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 298
           ++ DKRIDP GAC+GMRG+RVQAVS ELGGER+DIVLWDDNPAQFVINAM+PA+VA+I+V
Sbjct: 241 RSKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIV 300

Query: 299 DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTIEDLQAKHQAEAHAAIDI 358
           DED H MDIAV   NLAQAIGR GQNVRLASQL+GW LNVMT +D+QAK QAE    +  
Sbjct: 301 DEDAHAMDIAVAEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEKDIQAKQQAETGDILRN 360

Query: 359 FTKHLDIDEEFATALVEEGFSSLEELAYVPIHELQDIDGLDEETIEALRERAKAALTTLA 418
           F + L++DEE A  LV+EGF+SLEE+AYVP+ E+ +IDG DE+ +  LR RAK  L T A
Sbjct: 361 FIEELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKA 420

Query: 419 LANEENRGSGQPAEDLLNLSGLSRELAFKLAACGVCTLEDLAEQGVDDLADIEGLGEEQA 478
           +A EE      PAEDLL+L G+ ++LA +LA  GV   EDLAEQ +DDL DI+G+ EE+A
Sbjct: 421 IATEEKLADAHPAEDLLSLEGMDKDLAAELAVRGVVNREDLAEQSIDDLLDIDGIDEERA 480

Query: 479 GELIMAARNICWF 491
           G+LIMAAR   WF
Sbjct: 481 GKLIMAAR-AHWF 492