Pairwise Alignments

Query, 631 a.a., DNA topoisomerase IV subunit B from Dickeya dianthicola ME23

Subject, 869 a.a., DNA gyrase subunit B (EC 5.99.1.3) from Variovorax sp. SCN45

 Score =  346 bits (887), Expect = 3e-99
 Identities = 218/585 (37%), Positives = 322/585 (55%), Gaps = 50/585 (8%)

Query: 4   SSYNADAIEVLSGLEPVRRRPGMY----TDTTRPNHLGQEVIDNSVDEALAGHARRIDVI 59
           +SY   +I +L GLE VR+RPGMY    +D T  +HL  EV+DNS+DEALAGH   I V 
Sbjct: 29  NSYGEGSITILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVT 88

Query: 60  LHPDQSLEVIDDGRGMP----VDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGV 115
           +H D S+ V D+GRG+P    +D   E    A E+ L  LHAGGKF+  +Y+ SGGLHGV
Sbjct: 89  IHSDNSISVTDNGRGIPTGVKMDDKHEPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGV 148

Query: 116 GISVVNALSTRVEVTVRRDGQVYDIAFE------------NGDKVQDLTVTGTCGRRNTG 163
           G+S VNALS  + + VRR+G+++++ F             +G +V  + + G   +R  G
Sbjct: 149 GVSCVNALSVMLRLVVRREGKIHELEFSRGFVQNRLLETVSGVEVSPMKIIGDTDKR--G 206

Query: 164 TRVHFWPDVTFF-DSPRFSVLSLTHLLKAKAVLCPGVEIVFKDGVNDTEQRWCYQGGLSD 222
           T VHF PD   F ++  F    L+  L+  + L  GV I  KD     E  +   GG+  
Sbjct: 207 TEVHFLPDTQIFKENNDFHYEILSKRLRELSFLNNGVRIRLKDERTGKEDDFSGAGGVRG 266

Query: 223 YLCEAVNGLPTLPEKPFI----------GVIPGDTEAVEWALLWLPEGGELLTESYVNLI 272
           ++     G   L    F           G IPG    VE A+ W     E +   + N I
Sbjct: 267 FVEFINKGKTVLHPNSFYAEGERPADTYGGIPGTHIGVEVAMQWNSGYNEQVL-CFTNNI 325

Query: 273 PTLQGGTHVNGLRQGLLDAMREFCEFRNILPRG-VKLSAEDIWERCAYVLSLKMQDPQFA 331
           P   GGTH+ GLR  +   + ++ E      +  V+++ +D+ E    VLS+K+ +P+F+
Sbjct: 326 PQRDGGTHLTGLRAAMTRVINKYIEENEFAKKAKVEVTGDDMREGLCCVLSVKVPEPKFS 385

Query: 332 GQTKERLSSRQSAAFVSGVVKDAFSLWLNQNVQAAEQLAEMAISSAQRR--MRAAKKVVR 389
            QTK++L S +  A V  +V    + +L +    A+ +    + +A+ R   R A+++ R
Sbjct: 386 SQTKDKLVSSEVRAPVEDIVGKLLTDYLQERPNDAKIICGKIVEAARAREAARKAREMTR 445

Query: 390 KK-LTSGPALPGKLADCTLQDLNKTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNT 448
           +K +  G  LPGKLADC  +D    E++LVEGDSAGGSAKQ RDR++QAI+PL+GKILN 
Sbjct: 446 RKGVLDGMGLPGKLADCQEKDPALCEVYLVEGDSAGGSAKQGRDRKFQAILPLRGKILNV 505

Query: 449 WEVSSDEVLASQEVHDISVAIGI------------DPDSDDLSQLRYGKVCILADADSDG 496
            +   +++L S E+  +  A+G               D  ++++LRY ++ I+ DAD DG
Sbjct: 506 EKARYEKLLTSNEILTMITALGTGIGRAGATTAGGGADDFNVAKLRYHRIIIMTDADVDG 565

Query: 497 LHIATLLCALFVRHFRALVQGGHVHVAMPPLYRIDLGKEVYYALD 541
            HI TLL   F R    LV+ GH+++A PPLY++ +GKE  Y  D
Sbjct: 566 AHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKVGKEEQYLKD 610



 Score = 52.0 bits (123), Expect = 1e-10
 Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 562 QRFKGLGEMNPMQLRETTLDPNTRRLVQLTINEQDIEQTLATMDMLLAKKRAEDRRNWLQ 621
           QR+KGLGEMNP QL ETT+DP  RRL+++ I++      + TM   L     E RR +++
Sbjct: 802 QRYKGLGEMNPEQLWETTMDPTVRRLLRVQIDDAIEADRVFTM---LMGDEVEPRREFIE 858

Query: 622 EKGDKA 627
           +   +A
Sbjct: 859 QNALRA 864