Pairwise Alignments

Query, 1407 a.a., DNA-directed RNA polymerase subunit beta' from Dickeya dianthicola ME23

Subject, 1407 a.a., DNA-directed RNA polymerase subunit beta' from Escherichia coli ECRC62

 Score = 2635 bits (6831), Expect = 0.0
 Identities = 1334/1407 (94%), Positives = 1378/1407 (97%)

Query: 1    MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60
            +KDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
Sbjct: 1    VKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60

Query: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120
            IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
Sbjct: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120

Query: 121  PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM 180
            PSRIGLLLDMPLRDIERVLYFESYVV+EGGMTNLER+QILTEEQYLDALEEFGDEFDAKM
Sbjct: 121  PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM 180

Query: 181  GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT 240
            GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
Sbjct: 181  GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT 240

Query: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300
            VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
Sbjct: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300

Query: 301  EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360
            EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
Sbjct: 301  EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360

Query: 361  LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420
            LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
Sbjct: 361  LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420

Query: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480
            VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
Sbjct: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480

Query: 481  RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG 540
            RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAER+YR+G
Sbjct: 481  RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSG 540

Query: 541  LASLHARVKVRITEHEKNAQGEWIAKTSIIDTTVGRAILWMIVPKGLPYSIVNQALGKKA 600
            LASLHARVKVRITE+EK+A GE +AKTS+ DTTVGRAILWMIVPKGLPYSIVNQALGKKA
Sbjct: 541  LASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKA 600

Query: 601  ISKMLNTCYRVLGLKPTVIFADQIMYTGFAYAARSGSSVGIDDMVIPAKKVEIISEAEAE 660
            ISKMLNTCYR+LGLKPTVIFADQIMYTGFAYAARSG+SVGIDDMVIP KK EIISEAEAE
Sbjct: 601  ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE 660

Query: 661  VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTETVINRNGEEERQVSFN 720
            VAEIQEQFQSGLVTAGERYNKVIDIWAAAN+RV+KAMM+NL TETVINR+G+EE+QVSFN
Sbjct: 661  VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFN 720

Query: 721  SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR 780
            SI+MMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
Sbjct: 721  SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR 780

Query: 781  KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRERVL 840
            KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLR+RVL
Sbjct: 781  KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVL 840

Query: 841  GRVTAEDVLKPGTADILVPRNMLLNEKWCDLLEENSVDAVKVRSVVGCETDFGVCAKCYG 900
            GRVTAEDVLKPGTADILVPRN LL+E+WCDLLEENSVDAVKVRSVV C+TDFGVCA CYG
Sbjct: 841  GRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYG 900

Query: 901  RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSLKL 960
            RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGS+KL
Sbjct: 901  RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL 960

Query: 961  SNAKFVKNVAGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMGKGDGDDVSGGETVANW 1020
            SN K V N +GKLVITSRNTELKLIDEFGRTKESYKVPYGAV+ KGDG+ V+GGETVANW
Sbjct: 961  SNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANW 1020

Query: 1021 DPHTMPVITEVGGSIRFTDMIDGQTITRQTDELTGLSSIVVLDSAERTGGGKDLRPALKI 1080
            DPHTMPVITEV G +RFTDMIDGQTITRQTDELTGLSS+VVLDSAERT GGKDLRPALKI
Sbjct: 1021 DPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI 1080

Query: 1081 VDGKGDDVLIPGTDMPAQYFLPGKAIVQLEDGSQIGAGDTLARIPQESGGTKDITGGLPR 1140
            VD +G+DVLIPGTDMPAQYFLPGKAIVQLEDG QI +GDTLARIPQESGGTKDITGGLPR
Sbjct: 1081 VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPR 1140

Query: 1141 VADLFEARRPKEPAILAEISGVVSFGKETKGKRRLVITPVDGSEPYEEMIPKWRQLNVFE 1200
            VADLFEARRPKEPAILAEISG+VSFGKETKGKRRLVITPVDGS+PYEEMIPKWRQLNVFE
Sbjct: 1141 VADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE 1200

Query: 1201 GERVERGDVISDGPESPHDILRLRGVHAVTRYIVNEVQEVYRLQGVKINDKHIEVIVRQM 1260
            GERVERGDVISDGPE+PHDILRLRGVHAVTRYIVNEVQ+VYRLQGVKINDKHIEVIVRQM
Sbjct: 1201 GERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM 1260

Query: 1261 LRKGTIVNPGSSEFLEGEQVEMSRIKIANRQLETNGKISATYSRDLLGITKASLATESFI 1320
            LRK TIVN GSS+FLEGEQVE SR+KIANR+LE NGK+ ATYSRDLLGITKASLATESFI
Sbjct: 1261 LRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFI 1320

Query: 1321 SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRQAGEPQA 1380
            SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRR AGE  A
Sbjct: 1321 SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPA 1380

Query: 1381 APQVSAEEASANLAELLNAGLGGSDDE 1407
            APQV+AE+ASA+LAELLNAGLGGSD+E
Sbjct: 1381 APQVTAEDASASLAELLNAGLGGSDNE 1407