Pairwise Alignments

Query, 720 a.a., DNA helicase II from Dickeya dianthicola 67-19

Subject, 806 a.a., ATP-dependent DNA helicase UvrD/PcrA from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  600 bits (1548), Expect = e-176
 Identities = 349/804 (43%), Positives = 474/804 (58%), Gaps = 96/804 (11%)

Query: 4   SDLLDSLNDKQRDAVAAARSNMLVLAGAGSGKTRVLVHRIAWLLTVENCSPYSVMAVTFT 63
           S LL  LN +Q  AV     + L+LAGAGSGKTRVL  RIAWLL     SP  ++AVTFT
Sbjct: 12  SPLLAGLNAEQSAAVLLPAEHALILAGAGSGKTRVLTTRIAWLLQSGQVSPGGILAVTFT 71

Query: 64  NKAAAEMRHRIDQLLGTGQGGMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLL 123
           NKAA EM  R+  +L     GMWIGTFHGL +R LRAHH  A LP  FQILD++DQL  +
Sbjct: 72  NKAAKEMMTRLSAMLPINVRGMWIGTFHGLCNRFLRAHHKLANLPATFQILDTQDQLSAI 131

Query: 124 KRLVKALNLDEKQWPPRQAMWYINGKKDEGLRPQHIDSYGNPVEQTWLRIYQAYQEACDR 183
           KRL K  N+D++++PP+Q  ++I+G K++G RP  + +      +  L +Y  Y+E C R
Sbjct: 132 KRLCKQFNVDDERYPPKQIQYFISGCKEDGQRPHDVPARDEETRKK-LELYALYEEQCQR 190

Query: 184 AGLVDFAELLLRAHELWLNKPHILQHYRDRFNNILVDEFQDTNRIQYAWIRLLAGDSAK- 242
            G+VDF EL+LR++E+  +   + +HY+ RF +IL+DEFQDTNR+QYAWI++ +    + 
Sbjct: 191 EGVVDFGELMLRSYEVLRDNDPVREHYQRRFRHILIDEFQDTNRLQYAWIKMFSAPPLEG 250

Query: 243 -------VMIVGDDDQSIYGWRGAQVENIQHFLRDFSDVTTIRLEQNYRSTANILNAANA 295
                  V  VGDDDQSIY +RGA+V N+  F+R+F     I+LEQNYRS +NIL++AN 
Sbjct: 251 LTPSGNAVFAVGDDDQSIYAFRGARVGNMADFVREFGVRHQIKLEQNYRSVSNILDSANQ 310

Query: 296 LIAHNGDRLGKNLWTDGIDGEPISLYCAFNELDEARFVVSRIKVWQEAGGALSECAILYR 355
           LI+HN  RLGKNL TD   GEP+ ++ A ++  EA+++V  +K     G   SE A+LYR
Sbjct: 311 LISHNTHRLGKNLRTDAGAGEPVRVFEATSDFAEAQWMVDEMKQLAREGIPRSEMAVLYR 370

Query: 356 SNAQSRVLEEALLQQSLPYRIYGGMRFFERQEIKDALSYLRLMANRNDDAAFERVVNTPT 415
           SNAQSRV+E AL   +LPYR+YGG+RFFER EIK AL+YLRL+ N +DD +F RVVN P 
Sbjct: 371 SNAQSRVVETALFNAALPYRVYGGLRFFERAEIKHALAYLRLLENAHDDTSFLRVVNFPP 430

Query: 416 RGIGDRTLDVVRQTARDRQLTLWQATRALLQEKVLAGRAAAALQRFLELVDALASDTADL 475
           RGIG R+++ ++  AR    +L  A  A      + GRA  A+  F   +D +   T   
Sbjct: 431 RGIGARSIEQLQDVARTSGCSLHDAVSA------VTGRAGVAVGNFAAKIDVMREQTEGR 484

Query: 476 PLHVQTDRVIRDSGLWSMYEQEKGEKGQARVENLEELVTATRQF---------------- 519
            L    + V+  SGL   Y  E+  +GQ RVENLEELV A   F                
Sbjct: 485 TLREIIELVLAHSGLIEHYRGER--EGQDRVENLEELVNAAESFVSIEGFGRDAVALPVD 542

Query: 520 ---------------------------SYQDEDQDLLPLQAFLSHAALEAGEGQADAYQD 552
                                         +  + L PL AFL+HAALE+G+ QA A QD
Sbjct: 543 ELGKPLTQSPVSQGLDPNLPVVDEPLAPDAETGETLSPLAAFLTHAALESGDNQAQAGQD 602

Query: 553 AVQLMTLHSAKGLEFPQVFVVGMEEGMFPSQMSLDEGGRLEEERRLAYVGVTRAMQKLTL 612
           AVQLMT+H+AKGLEF  VF+ GMEEG+FP + S+ +   LEEERRL YV +TRA ++L L
Sbjct: 603 AVQLMTVHAAKGLEFDCVFITGMEEGLFPHENSMSDRDGLEEERRLMYVAITRARKRLYL 662

Query: 613 TYAESRRLYGKETYHRPSRFIGELPTECVEEVR-LRASVSRPV--------NHQR----- 658
           +++++R L+G+  Y+  SRF  ELP EC++ +   + + S P+        N +R     
Sbjct: 663 SHSQTRMLHGQTRYNMKSRFFDELPEECLKWLTPPQPAWSAPMGGGGGQWQNGRRGFGGA 722

Query: 659 --------------------LGTPISQSDTGYKL--GQRVRHAKFGEGTIVNVEGSGEHC 696
                               LG    + D G ++  G  V H KFGEG ++ VEG+G+  
Sbjct: 723 PAALQPSWSPGFKERGDPKGLGQTAPEPDRGTEIRAGLAVFHNKFGEGKVLAVEGAGDDA 782

Query: 697 RIQVAFAGQGIKWLVAAYARLDTV 720
           R QV F   G KWL  + A+L  +
Sbjct: 783 RAQVNFTRHGTKWLALSVAKLTPI 806