Pairwise Alignments

Query, 316 a.a., sigma-E factor regulatory protein RseB from Dickeya dianthicola 67-19

Subject, 320 a.a., RNA polymerase sigma-H factor AlgU from Pseudomonas simiae WCS417

 Score = 98.6 bits (244), Expect = 2e-25
 Identities = 84/322 (26%), Positives = 145/322 (45%), Gaps = 30/322 (9%)

Query: 11  LLGSLSYSSLAPASDSGALLQQMSSASRSLNYEIYYISVSRQGIESLRYRHTVQNGETLA 70
           LL S  ++  A A ++   L ++  A +  +++  ++        +    H VQ G+   
Sbjct: 9   LLLSGCFALPAHADEAQDWLTRLGRAEQQQSFQGTFVYERNGSFSTHDIWHRVQEGQVRE 68

Query: 71  ELIHLDGPKREVMQRGSDISYFEADAEPFTLSGDHIV---DSLPALIFA-NVERLSAYYD 126
            L+ LDG  +EV++          D     +SG  +    +S  A   A + ++L  +Y+
Sbjct: 69  RLLQLDGSAQEVVR---------LDGRTQCVSGTLVAGLGNSRDAPSRALDPQKLKQFYE 119

Query: 127 FIPTGRIRLADRQGDVVRIVSRDGTRFSYIVCLDAESRLPLRVDLLDQNGDLLEQYRAIS 186
               G+ R+A R   +V I  RD  R+ + + LD E+ LPL+  LL+  G LLE+++   
Sbjct: 120 LAVIGKSRVAGRNAVIVSITPRDQYRYGFELHLDRETALPLKSLLLNDQGQLLERFQFTR 179

Query: 187 ITV-------DKNAPLAMKPMDKVSQPPLLSIPTTSTVNFNWVTEWLPAGVEEVSHSQRP 239
           +         D        P+   ++   +  PT +     W  EWLP G +  S S R 
Sbjct: 180 LNTSVVPDDRDLQPSSECAPLSVANEKAPVVQPTEA-----WHLEWLPPGFQLTSTSSRK 234

Query: 240 LPGVTGLVESRLYSDGLFSFSVNISPVGETHPDQNASLGRKTIHTEVRDN-----REITV 294
                  V+S +Y DGL  FSV + P+ +    +  +    T+    R N       +TV
Sbjct: 235 DTQTKATVDSLMYEDGLARFSVFLEPISDASVTETRTQLGPTVAVSRRLNTVDGEMMVTV 294

Query: 295 IGELPLATAKRIADNVIFKAQP 316
           +GE+P+ TA+RIA +V  + +P
Sbjct: 295 VGEIPIGTAERIALSVRGEKKP 316