Pairwise Alignments

Query, 1049 a.a., ribonuclease E from Dickeya dianthicola 67-19

Subject, 977 a.a., ribonuclease E from Agrobacterium fabrum C58

 Score =  360 bits (924), Expect = e-103
 Identities = 235/637 (36%), Positives = 343/637 (53%), Gaps = 33/637 (5%)

Query: 90  IKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRI-EGDDR 148
           I++V++  Q ++VQV KEERGNKGAALTT++SLAG Y VLMPN  R GGISR+I +  DR
Sbjct: 269 IQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITQPTDR 328

Query: 149 TELKEALGSLELPDGMGLIVRTAGVGKSADALQWDLAFRLKHWEAIKKAAEGRSAPFLIH 208
             LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ WE ++      +AP L++
Sbjct: 329 KRLKEIARDLEVPQGMGVILRTAGANRTRVEIKRDFEYLMRLWENVRTLTLNSTAPCLVY 388

Query: 209 QESNVIVRAFRDYLRPDIGEILIDNPKILELAKEHIAALGRPDFGSKIKLYTGEIPLFSH 268
           +E ++I R+ RD    DI EI++   +    AK+ +  L  P     ++ Y    P+FS 
Sbjct: 389 EEGSLIKRSIRDLYNKDISEIIVSGEEGYREAKDFMKML-MPSHAKVVQPYRDIHPIFSR 447

Query: 269 YQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARATRGGDIEETAFNTNLEAAD 328
             IE+Q++   Q +V L SGG ++I+ TEAL AID+NS R+TR   IEETA  TNLEAA+
Sbjct: 448 SGIEAQLDRMLQPQVTLKSGGYLIINQTEALVAIDVNSGRSTREHSIEETALTTNLEAAE 507

Query: 329 EIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQDRARIQIGRISRFGLLEMS 388
           E+ARQLRLRDL GL+VIDFIDM   R+ R VE +L+D ++ DRARIQ+GRIS FGLLEMS
Sbjct: 508 EVARQLRLRDLAGLVVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISHFGLLEMS 567

Query: 389 RQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEEALKENTKEVHAIVPVPIA 448
           RQR+  S+ ES+  VC  C GTG +R   S++L +LR +EE  L+  T  +        A
Sbjct: 568 RQRIRASVLESTTQVCQHCGGTGHVRSESSIALHVLRGVEEYLLRNTTHNITVRCTPETA 627

Query: 449 SYLLNEKREAVNAIEKRQGDVRAIIVPHDGMETPHYSVLR---VRKGEEKQTLSYMLPQL 505
            YLLN KR ++   E R G V  II     +   H+++ R   V    + ++L  MLP  
Sbjct: 628 LYLLNHKRGSIVDYEGRFG-VAIIIAADSSVGAQHFAIDRGEAVENPVKIESLIQMLPSF 686

Query: 506 LDVESQPSLEEQTPERRVPEQPALASFTMSDIPPAETKPAPVVTAPKAEKQPSSSERGLF 565
           ++ E    +E +  E    E+  +         P +          K +++     RG  
Sbjct: 687 VEEEDDIVIEVEEDE----EEEEIVK--AESAQPRQQPQGDNGEDGKRKRKRRRRRRGKG 740

Query: 566 GRFV--GALKGIFAAPADVKEKP-----AETVEATSDEQEQKQERRNNRRQSGRRERPRD 618
           G+    GAL G     A+  +        ET EA +D  E       N  + G+R+R R 
Sbjct: 741 GQNEQNGALDGQSGNDAEDDDAEGDDDGVETDEAGADSDENGANEAANADEDGKRKRRRR 800

Query: 619 NREPRER------DEQRRNKRTQPQNADVE----TAPVAEAPAQDKAVRD----EQRREQ 664
            +    R      D    +  T+ + A+ E     APV E PA    V +    +   E+
Sbjct: 801 GKRGGRRNRDDALDAAGADGETEGEGAEGEEVSTAAPVTEEPATAAEVVEGVVADVVAEE 860

Query: 665 RAERQRRRQEEKRQAQDDVKELNAVTEAADTEDAVAE 701
             ++ RR ++ K + + + +E          E  + E
Sbjct: 861 APKKPRRTRKAKTKTETETEEAPKAETVETVEPVIIE 897



 Score = 84.7 bits (208), Expect = 3e-20
 Identities = 39/76 (51%), Positives = 54/76 (71%)

Query: 3  RMLINATQQEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62
          +MLI+A+ +EE RV +V G ++ + D ES   +Q + NIY  K+TR+EPSL+AAFVDYG 
Sbjct: 4  KMLIDASHEEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVDYGG 63

Query: 63 ERHGFLPLKEIAREYF 78
           RHGFL   EI  +Y+
Sbjct: 64 NRHGFLAFAEIHPDYY 79