Pairwise Alignments

Query, 1150 a.a., transcription-repair coupling factor from Dickeya dianthicola 67-19

Subject, 1160 a.a., Transcription-repair coupling factor from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 1018 bits (2632), Expect = 0.0
 Identities = 554/1150 (48%), Positives = 748/1150 (65%), Gaps = 25/1150 (2%)

Query: 15   GEQRLLGQLTGAACAVECAEIVERHAG---LVVLITPDMQNALRLRDEIQQFTAQPVMTL 71
            G++  +    G+A A+  A++  R      L  ++T D  +A RL DE+  F       L
Sbjct: 9    GKRHTVPHPGGSADALMLAQLGAREKAEGRLTAIVTADANDAQRLIDEMAFFAPGLRCAL 68

Query: 72   -PDWETLPYDSFSPHQEIISARLSTLYQLPSLTRG----VLILPVNTLMQKVCPHAFLHG 126
             PDWETLPYD+FSPHQ++IS RL+TL+++    +     V+++P  T + ++ P +FL G
Sbjct: 69   FPDWETLPYDTFSPHQDLISERLATLWRISQRDKDTGADVVLIPATTALYRLAPPSFLAG 128

Query: 127  HALMLKKGQRLSRDRLRNQLEQAGYRSVDQVMEHGEFATRGALLDLFPMGSEEPFRIDFF 186
            +    K  Q+L   RL+ QL  AGY+ V QV+  GE+A RG L+DLFPMGS  P+R+D F
Sbjct: 129  YTFHFKVKQKLDEARLKGQLTLAGYQHVTQVVSPGEYAVRGGLIDLFPMGSLVPYRVDLF 188

Query: 187  DDEIDSLRLFDADTQRTLNEVDQIHLLPAREFPTDKTAIELFRSQWREQFEVRRDAEHIY 246
            DDEIDS+R FD D+QR+L  V+++ LLP REFP D  A   FRS+WRE  E       IY
Sbjct: 189  DDEIDSIRTFDPDSQRSLYPVNEVRLLPGREFPMDDAARAKFRSRWRELLEGDPTKSRIY 248

Query: 247  QQVSKGTLPAGIEYWQSLFFNQPLPALFSYLPTGTLLVNTGDIQQGADRFWQDIQQRHDS 306
            + +  G   AGIEY+  LFF+     +F YL T   +V  GD++    RFWQD + RH  
Sbjct: 249  KDIGNGVATAGIEYYLPLFFDDTA-TVFDYLGTDATVVLHGDLEPAFQRFWQDTKDRHRL 307

Query: 307  RRVDPMRPLPPPDALWLPVDTLFAELKQWPRVQLRSDTLP-DKAANINLGYQPLPDLAVQ 365
             R D  RP+ PP+AL+L  +  +    +  +  +R      +  A++    Q L DL+V 
Sbjct: 308  LRGDAERPVLPPEALFLATEQFYTRANEHAQYVVRPAQQDIEHGAHV----QKLGDLSVV 363

Query: 366  HQNKSPLDALRRFVEQFGGQVVFSVESEGRRETLQELLSRIKLSPAPVKSLE--QAASPG 423
               + PL  L+  +     +V+   ES+GRRE+L + L    + P    SL   QA+   
Sbjct: 364  RGAEDPLARLQAHIRNTAHRVLLLAESDGRRESLLDFLRASGVHPPAFDSLAEFQASDEK 423

Query: 424  CYLMIGASEHGFIDTLRQRTLICESDLLGER-VSRRRQDSRRTINTDTLIRNLAELRPGQ 482
              +   A   GF         + E++L      +RRR+   +  + D LI++L+EL  G 
Sbjct: 424  TGIATAALAVGFSWLDDGIDFVTETELFAAGPTTRRRRKQEQVSDVDALIKDLSELNVGD 483

Query: 483  PVVHLEHGVGRYAGLTTLEAG-----GIKA--EYLILHYAGEDKLYVPVSSLHLISRYAG 535
            PVVH  HG+GRY GL  ++ G     G  A  E+L L YA +  LYVPVS L LI RY G
Sbjct: 484  PVVHNAHGIGRYRGLVNMDMGEKNPDGSPALQEFLHLEYADKAVLYVPVSQLQLIGRYTG 543

Query: 536  GAEESAPLHKLGGDAWVRARQKAAEKVRDVAAELLDVYAQRAAHTGFAFKHDREQYQLFC 595
             + + APLHKLG   W +A++KAAE+VRD AAELL++YA+RAA  G AF++  + Y++F 
Sbjct: 544  VSADEAPLHKLGSGQWDKAKRKAAEQVRDAAAELLNIYARRAARQGHAFRYSAQDYEVFA 603

Query: 596  QGFPFDTTPDQAQAINAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAV 655
              F F+ T DQ  AI+AV+ DM  P  MDRLVCGDVGFGKTEVA+RAAF+AV   +QVA 
Sbjct: 604  NDFGFEETADQRGAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFVAVTGGRQVAF 663

Query: 656  LVPTTLLAQQHFDNFRDRFANWPVRIEMLSRFRSQKEQTQVLEQTQEGKVDILIGTHKLL 715
            L PTTLLA+QHF    DRF+ WPV++  +SRFRS KE T   +   +G VDI++GTHKLL
Sbjct: 664  LAPTTLLAEQHFQTLSDRFSKWPVKVAEMSRFRSAKEITAAAKGLADGSVDIVVGTHKLL 723

Query: 716  QSDVYWRDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGIRDLS 775
               V ++DLGLLI+DEEHRFGVRHKE +KA+RA VD+LTLTATPIPRTL MA+ G+RDLS
Sbjct: 724  SESVKFKDLGLLIIDEEHRFGVRHKEAMKALRAEVDVLTLTATPIPRTLGMALEGLRDLS 783

Query: 776  IIATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIEKAAQQLNELVP 835
            +IAT P RRLA+KTFVR   + V+REA+LRE+ RGGQVY+L+N+VE IE   Q+L E++P
Sbjct: 784  VIATAPQRRLAIKTFVRNEGNGVIREAVLRELKRGGQVYFLHNEVETIENRRQKLEEILP 843

Query: 836  EARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLA 895
            EARIAI HGQM ER+LERVM DF  QRFNVL+C+TIIETGID+P+ANTI++ RAD FGLA
Sbjct: 844  EARIAIAHGQMPERELERVMRDFVAQRFNVLLCSTIIETGIDVPTANTIVMSRADKFGLA 903

Query: 896  QLHQLRGRVGRSHHQAYAYLLTPNPKAMSNDAHKRLEAIASLEDLGAGFALATHDLEIRG 955
            QLHQLRGRVGRSHHQAYAYL+ P+ + ++  A +RL+AI  +E+LG+GF LA HDLEIRG
Sbjct: 904  QLHQLRGRVGRSHHQAYAYLMVPDIEGLTKHAAQRLDAIQQMEELGSGFYLAMHDLEIRG 963

Query: 956  AGELLGEGQSGQMESVGFSLYMDLLESAVESLKAGREPSLEDLISGQTDVELRLPALLPD 1015
            AGE+LGE QSG M  VGF LY ++L  AV SLKAGREP L   +S  TD+ L  PALLP+
Sbjct: 964  AGEVLGEHQSGNMLEVGFQLYNEMLSEAVSSLKAGREPDLLSPLSVTTDINLHAPALLPN 1023

Query: 1016 DFIPDVNTRLSFYKRIASAKNDNELDDLKAELIDRFGKLPDAARHLLQVAGLRQQAQTLG 1075
            D+  DV+ RLSFYK++A+AK+ +++D L  E++DRFGKLP  A+ L+ V  LR  +   G
Sbjct: 1024 DYCGDVHLRLSFYKKLATAKSTDQVDALLEEIVDRFGKLPPQAQTLIDVHRLRCISTPYG 1083

Query: 1076 IKRIEGNDKGGFVEFSQHNRVDPTHLIGLLQRDPKIYRLDGPSRLKFIKDLGEYPQRLTF 1135
            + +++       + F  +   +P  +I L+Q++  I +L G  +L+  + L E   R+  
Sbjct: 1084 VVKVDAAPGVTNITFRANPPFEPMRIIELIQKNRHI-KLAGNDKLRIERPLPEVKDRVQL 1142

Query: 1136 ITTLLEEMAQ 1145
            +  +L  + Q
Sbjct: 1143 VRDVLRSLGQ 1152