Pairwise Alignments

Query, 1150 a.a., transcription-repair coupling factor from Dickeya dianthicola 67-19

Subject, 1148 a.a., Transcription-repair coupling factor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 1867 bits (4835), Expect = 0.0
 Identities = 928/1148 (80%), Positives = 1034/1148 (90%)

Query: 2    MPEQYRYTLPGKAGEQRLLGQLTGAACAVECAEIVERHAGLVVLITPDMQNALRLRDEIQ 61
            MPE+ RYTLP KAG+QR LG+LTGAACA   AEI ERHAG VVLI PDMQNALRL DEI+
Sbjct: 1    MPEKQRYTLPTKAGDQRQLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIR 60

Query: 62   QFTAQPVMTLPDWETLPYDSFSPHQEIISARLSTLYQLPSLTRGVLILPVNTLMQKVCPH 121
            QFT Q VM L DWETLPYDSFSPHQEIIS+RLSTLYQLPS+ RGVLI+PVNTLMQ+VCPH
Sbjct: 61   QFTDQMVMNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQRGVLIVPVNTLMQRVCPH 120

Query: 122  AFLHGHALMLKKGQRLSRDRLRNQLEQAGYRSVDQVMEHGEFATRGALLDLFPMGSEEPF 181
            ++LHGHAL++KKGQRLSRD LR QL+ AGYR VDQVMEHGE+ATRGALLDLFPMGSE+P+
Sbjct: 121  SYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPY 180

Query: 182  RIDFFDDEIDSLRLFDADTQRTLNEVDQIHLLPAREFPTDKTAIELFRSQWREQFEVRRD 241
            R+DFFDDEIDSLRLFDADTQRTL EV+ I+LLPA EFPTDK AIELFRSQWR+ FEV+RD
Sbjct: 181  RLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD 240

Query: 242  AEHIYQQVSKGTLPAGIEYWQSLFFNQPLPALFSYLPTGTLLVNTGDIQQGADRFWQDIQ 301
            AEHIYQQVSKGTLPAGIEYWQ LFF++PLP LFSY P  TL+VNTG ++  A+RF  D  
Sbjct: 241  AEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLVVNTGSLETSAERFQADTL 300

Query: 302  QRHDSRRVDPMRPLPPPDALWLPVDTLFAELKQWPRVQLRSDTLPDKAANINLGYQPLPD 361
             R ++R VDPMRPL PP+ALWL VD LF+ELK+WPR+QL++D LP+KAAN NLG+Q LPD
Sbjct: 301  ARFENRGVDPMRPLLPPEALWLRVDELFSELKRWPRLQLKTDHLPEKAANTNLGFQKLPD 360

Query: 362  LAVQHQNKSPLDALRRFVEQFGGQVVFSVESEGRRETLQELLSRIKLSPAPVKSLEQAAS 421
            LA+Q Q K+PLDALR+F+E F G V+FSVESEGRRE L ELL+RIK++P  +  L++A  
Sbjct: 361  LAIQAQQKAPLDALRKFLESFSGPVIFSVESEGRREALGELLARIKIAPKRILRLDEAQD 420

Query: 422  PGCYLMIGASEHGFIDTLRQRTLICESDLLGERVSRRRQDSRRTINTDTLIRNLAELRPG 481
             G YLMIGA+EHGFIDT R   LICESDLLGERV+RRR DSRRTIN DTLIRNLAEL  G
Sbjct: 421  AGRYLMIGAAEHGFIDTQRNLALICESDLLGERVARRRLDSRRTINPDTLIRNLAELHVG 480

Query: 482  QPVVHLEHGVGRYAGLTTLEAGGIKAEYLILHYAGEDKLYVPVSSLHLISRYAGGAEESA 541
            QPVVHLEHGVGRYAG+TTLEAGGIK EYL+L YA + KLYVPVSSLHLISRYAGGAEESA
Sbjct: 481  QPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEESA 540

Query: 542  PLHKLGGDAWVRARQKAAEKVRDVAAELLDVYAQRAAHTGFAFKHDREQYQLFCQGFPFD 601
            PLHKLGGDAW RARQKAAEKVRDVAAELLD+YAQRAA  GFAFKHDREQYQLFC  FPF+
Sbjct: 541  PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE 600

Query: 602  TTPDQAQAINAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL 661
            TTPDQAQAINAVLSDMC+PLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL
Sbjct: 601  TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL 660

Query: 662  LAQQHFDNFRDRFANWPVRIEMLSRFRSQKEQTQVLEQTQEGKVDILIGTHKLLQSDVYW 721
            LAQQH+DNFRDRFANWPVRIEMLSRFRS KEQTQ+L +  EGK+DILIGTHKLLQSDV  
Sbjct: 661  LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKL 720

Query: 722  RDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGIRDLSIIATPP 781
            RDLGLLIVDEEHRFGVRHKERIKAMRA+VDILTLTATPIPRTLNMAMSG+RDLSIIATPP
Sbjct: 721  RDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 780

Query: 782  ARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIEKAAQQLNELVPEARIAI 841
            ARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENI+KAA++L ELVPEARIAI
Sbjct: 781  ARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI 840

Query: 842  GHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLR 901
            GHGQMRER+LERVMNDFHHQRFNVLVCTTIIETGIDIP+ANTIIIERADHFGLAQLHQLR
Sbjct: 841  GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900

Query: 902  GRVGRSHHQAYAYLLTPNPKAMSNDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 961
            GRVGRSHHQAYA+LLTP+PKAM+ DA KRLEAIASLEDLGAGFALATHDLEIRGAGELLG
Sbjct: 901  GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960

Query: 962  EGQSGQMESVGFSLYMDLLESAVESLKAGREPSLEDLISGQTDVELRLPALLPDDFIPDV 1021
            E QSG ME++GFSLYM+LLE+AV++LKAGREPSLEDL S QT+VELR+P+LLPDDFIPDV
Sbjct: 961  EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV 1020

Query: 1022 NTRLSFYKRIASAKNDNELDDLKAELIDRFGKLPDAARHLLQVAGLRQQAQTLGIKRIEG 1081
            NTRLSFYKRIASAKN+NEL+++K ELIDRFG LPD AR+LL +A LRQQAQ LGI+++EG
Sbjct: 1021 NTRLSFYKRIASAKNENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEG 1080

Query: 1082 NDKGGFVEFSQHNRVDPTHLIGLLQRDPKIYRLDGPSRLKFIKDLGEYPQRLTFITTLLE 1141
            N+KGG +EF++ N VDP  LIGLLQ+ P+ +RLDGP+RLKFI+DL E   R+ ++   ++
Sbjct: 1081 NEKGGTIEFAEKNHVDPAWLIGLLQKQPQHFRLDGPTRLKFIQDLSERKTRIDWVRQFMQ 1140

Query: 1142 EMAQHTCA 1149
            ++ ++  A
Sbjct: 1141 QLEENAIA 1148