Pairwise Alignments

Query, 1150 a.a., transcription-repair coupling factor from Dickeya dianthicola 67-19

Subject, 1148 a.a., transcription-repair coupling factor from Escherichia coli BL21

 Score = 1860 bits (4817), Expect = 0.0
 Identities = 924/1148 (80%), Positives = 1029/1148 (89%)

Query: 2    MPEQYRYTLPGKAGEQRLLGQLTGAACAVECAEIVERHAGLVVLITPDMQNALRLRDEIQ 61
            MPEQYRYTLP KAGEQRLLG+LTGAACA   AEI ERHAG VVLI PDMQNALRL DEI 
Sbjct: 1    MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIS 60

Query: 62   QFTAQPVMTLPDWETLPYDSFSPHQEIISARLSTLYQLPSLTRGVLILPVNTLMQKVCPH 121
            QFT Q VM L DWETLPYDSFSPHQ+IIS+RLSTLYQLP++ RGVLI+PVNTLMQ+VCPH
Sbjct: 61   QFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH 120

Query: 122  AFLHGHALMLKKGQRLSRDRLRNQLEQAGYRSVDQVMEHGEFATRGALLDLFPMGSEEPF 181
            +FLHGHAL++KKGQRLSRD LR QL+ AGYR VDQVMEHGE+ATRGALLDLFPMGSE P+
Sbjct: 121  SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 180

Query: 182  RIDFFDDEIDSLRLFDADTQRTLNEVDQIHLLPAREFPTDKTAIELFRSQWREQFEVRRD 241
            R+DFFDDEIDSLR+FD D+QRTL EV+ I+LLPA EFPTDK AIELFRSQWR+ FEV+RD
Sbjct: 181  RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD 240

Query: 242  AEHIYQQVSKGTLPAGIEYWQSLFFNQPLPALFSYLPTGTLLVNTGDIQQGADRFWQDIQ 301
             EHIYQQVSKGTLPAGIEYWQ LFF++PLP LFSY P  TLLVNTGD++  A+RF  D  
Sbjct: 241  PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLENSAERFQADTL 300

Query: 302  QRHDSRRVDPMRPLPPPDALWLPVDTLFAELKQWPRVQLRSDTLPDKAANINLGYQPLPD 361
             R ++R VDPMRPL PP +LWL VD LF+ELK WPRVQL+++ LP KAAN NLG++ LPD
Sbjct: 301  ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFEKLPD 360

Query: 362  LAVQHQNKSPLDALRRFVEQFGGQVVFSVESEGRRETLQELLSRIKLSPAPVKSLEQAAS 421
            LAVQ Q K+PLDALR+F+E F G VVFSVESEGRRE L ELL+RIK++P  +  L++A+ 
Sbjct: 361  LAVQAQQKAPLDALRKFLESFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASD 420

Query: 422  PGCYLMIGASEHGFIDTLRQRTLICESDLLGERVSRRRQDSRRTINTDTLIRNLAELRPG 481
             G YLMIGA+EHGF+D +R   LICESDLLGERV+RRRQDSRRTIN DTLIRNLAEL  G
Sbjct: 421  RGRYLMIGAAEHGFVDKVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG 480

Query: 482  QPVVHLEHGVGRYAGLTTLEAGGIKAEYLILHYAGEDKLYVPVSSLHLISRYAGGAEESA 541
            QPVVHLEHGVGRYAG+TTLEAGGI  EYL+L YA + KLYVPVSSLHLISRYAGGAEE+A
Sbjct: 481  QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA 540

Query: 542  PLHKLGGDAWVRARQKAAEKVRDVAAELLDVYAQRAAHTGFAFKHDREQYQLFCQGFPFD 601
            PLHKLGGDAW RARQKAAEKVRDVAAELLD+YAQRAA  GFAFKHDREQYQLFC  FPF+
Sbjct: 541  PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE 600

Query: 602  TTPDQAQAINAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL 661
            TTPDQAQAINAVLSDMC+PLAMDRLVCGDVGFGKTEVAMRAAFLAV+NHKQVAVLVPTTL
Sbjct: 601  TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL 660

Query: 662  LAQQHFDNFRDRFANWPVRIEMLSRFRSQKEQTQVLEQTQEGKVDILIGTHKLLQSDVYW 721
            LAQQH+DNFRDRFANWPVRIEM+SRFRS KEQTQ+L +  EGK+DILIGTHKLLQSDV +
Sbjct: 661  LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF 720

Query: 722  RDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGIRDLSIIATPP 781
            +DLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSG+RDLSIIATPP
Sbjct: 721  KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 780

Query: 782  ARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIEKAAQQLNELVPEARIAI 841
            ARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENI+KAA++L ELVPEARIAI
Sbjct: 781  ARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI 840

Query: 842  GHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLR 901
            GHGQMRER+LERVMNDFHHQRFNVLVCTTIIETGIDIP+ANTIIIERADHFGLAQLHQLR
Sbjct: 841  GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900

Query: 902  GRVGRSHHQAYAYLLTPNPKAMSNDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 961
            GRVGRSHHQAYA+LLTP+PKAM+ DA KRLEAIASLEDLGAGFALATHDLEIRGAGELLG
Sbjct: 901  GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960

Query: 962  EGQSGQMESVGFSLYMDLLESAVESLKAGREPSLEDLISGQTDVELRLPALLPDDFIPDV 1021
            E QSG ME++GFSLYM+LLE+AV++LKAGREPSLEDL S QT+VELR+P+LLPDDFIPDV
Sbjct: 961  EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSHQTEVELRMPSLLPDDFIPDV 1020

Query: 1022 NTRLSFYKRIASAKNDNELDDLKAELIDRFGKLPDAARHLLQVAGLRQQAQTLGIKRIEG 1081
            NTRLSFYKRIASAK +NEL+++K ELIDRFG LPD AR LL +A LRQQAQ LGI+++EG
Sbjct: 1021 NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG 1080

Query: 1082 NDKGGFVEFSQHNRVDPTHLIGLLQRDPKIYRLDGPSRLKFIKDLGEYPQRLTFITTLLE 1141
            N+KGG +EF++ N V+P  LIGLLQ+ P+ YRLDGP+RLKFI+DL E   R+ ++   + 
Sbjct: 1081 NEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMR 1140

Query: 1142 EMAQHTCA 1149
            E+ ++  A
Sbjct: 1141 ELEENAIA 1148