Pairwise Alignments

Query, 1227 a.a., exodeoxyribonuclease V subunit beta from Dickeya dianthicola 67-19

Subject, 1180 a.a., exonuclease V (RecBCD complex), beta subunit from Escherichia coli BL21

 Score =  786 bits (2031), Expect = 0.0
 Identities = 501/1241 (40%), Positives = 696/1241 (56%), Gaps = 99/1241 (7%)

Query: 10   LDVLRFPLAGSRLIEASAGTGKTFTIAMLYVRLVLGHGGEQAFSRPLNPPDILVVTFTDA 69
            LD LR PL G RLIEASAGTGKTFTIA LY+RL+LG GG  AF RPL   ++LVVTFT+A
Sbjct: 8    LDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA 67

Query: 70   ATRELRDRIRARLAQAAGYFQPDGKDDKEDEADPLLRALRADYPPEQWPACARKLQLAAE 129
            AT ELR RIR+ + +       +  D+   E   LL  +       QW      L LA  
Sbjct: 68   ATAELRGRIRSNIHELRIACLRETTDNPLYER--LLEEIDDKAQAAQW------LLLAER 119

Query: 130  WMDEAAVSTIHGWCNRMLGEHAFDSGSLFNQTLETDQSDVLLEVVRDYWRTFFFPLDARD 189
             MDEAAV TIHG+C RML  +AF+SG LF Q L  D+S +  +   D+WR   +PL    
Sbjct: 120  QMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREI 179

Query: 190  VLELRDSWPSPEHFYRSVTPLLE-YADEIGIDDLPAQIFSAVREEKTCRLAALKAPWPQW 248
               + ++W  P+   R +   L+  A  I       +  ++   +   R+  +K  W   
Sbjct: 180  AQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDA 239

Query: 249  CGELRDVLNAAVAQKKADGRKLQARYFESWLDKLHLWATSDETTLDIGTGWTRLTPQGLR 308
             GEL  ++ ++   ++   R  QA+    W+DK+  WA  +  +  +     + + + L 
Sbjct: 240  VGELDALIESSGIDRRKFNRSNQAK----WIDKISAWAEEETNSYQLPESLEKFSQRFLE 295

Query: 309  ECWKVPEETPQHPALTAMEALQQQLSDLPEPRSHLLRHACRWVSRRFRHEQESRAQMGFQ 368
            +  K   ETP+HP     EA+ Q L++    R  ++  A   +      E+  R ++GF 
Sbjct: 296  DRTKAGGETPRHPLF---EAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFD 352

Query: 369  DLLTRLDAALRGDNGERLAQRIRRQFPVAMIDEFQDTDPLQYRIFDTLYRVADNDPQQGL 428
            D+L+RLD+ALR ++GE LA  IR +FPVAMIDEFQDTDP QYRIF    R+  + P+  L
Sbjct: 353  DMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFR---RIWHHQPETAL 409

Query: 429  ILIGDPKQAIYAFRGADIYTYLRARRDTDGRHYTLGTNFRSTQAMVGAVNQVFMQAENRA 488
            +LIGDPKQAIYAFRGADI+TY++AR +    HYTL TN+RS   MV +VN++F Q ++  
Sbjct: 410  LLIGDPKQAIYAFRGADIFTYMKARSEVHA-HYTLDTNWRSAPGMVNSVNKLFSQTDD-- 466

Query: 489  DGAGAFLFRQPDGGNPVPFLPVQANGRDEA--WILEGADAAALTCWTLATDEPLSSAEYR 546
                AF+FR+      +PF+PV++ G+++A  ++ +G    A+  W L   E     +Y+
Sbjct: 467  ----AFMFRE------IPFIPVKSAGKNQALRFVFKGETQPAMKMW-LMEGESCGVGDYQ 515

Query: 547  QRMAAGCAREMVRLLQLGGQGRAGFAVPGQALRPVRPGDMAVLVNTGREAMAVRAQLSAR 606
              MA  CA ++   LQ G +G A   + G   RPVR  D++VLV + +EA  VR  L+  
Sbjct: 516  STMAQVCAAQIRDWLQAGQRGEA-LLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLL 574

Query: 607  GVRSVYLSDRESVFDSPQAGELHCWLAACADPENDRLLRAALGTPLLGLSWQALDRLNHD 666
             + SVYLS+R+SVF++ +A E+   L A   PE +  LR+AL T ++GL+   ++ LN+D
Sbjct: 575  EIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNND 634

Query: 667  EQEWERRVMQFVRYQSCWRQQGVLPMLRRLMWEFEVPRRLLA-ADNARALTDVLHLSELL 725
            E  W+  V +F  Y+  WR++GV+PMLR LM    +   LLA A   R LTD+LH+SELL
Sbjct: 635  EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELL 694

Query: 726  QQASVHLDGEHALIRYLAEQCQADNPGGDTLKLRLESDADLVKVVTVHKSKGLEYPLVFL 785
            Q+A   L+ EHAL+R+L++     +    + ++RLESD  LV++VT+HKSKGLEYPLV+L
Sbjct: 695  QEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWL 754

Query: 786  PFACAFRAVNQRDVPLKYHDDDG-QPRLELTVSDEAVQRADHERLGEDLRKFYVALTRAR 844
            PF   FR   Q      YHD    +  L+L  + E+V  A+ ERL EDLR  YVALTR+ 
Sbjct: 755  PFITNFRVQEQAF----YHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSV 810

Query: 845  YALWLGMAPL----------KDLEKSAPGYLLGAGEPLEPAQLAQPLSAWCGAHS--QMA 892
            +   LG+APL           D+ +SA G LL  GEP + A L   + A C      Q A
Sbjct: 811  WHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTA 870

Query: 893  PLPETD----DEVYRAELNAPALGQEPPLPDMRRHRWRITSYSGLQLAPEGHYREFREPS 948
             + +      ++V  AELNA  L + P         WR+TSYSGLQ    G  ++     
Sbjct: 871  QIGDNQPWQVNDVSTAELNAKTLQRLPG------DNWRVTSYSGLQQRGHGIAQDLMPRL 924

Query: 949  AGDVPEVQSAQQETFSEPQASVERLPPLPAGLDMYSFPRGAAPGSFLHGLLEWAGKEGFA 1008
              D   V S  +E    P                + FPRGA+PG+FLH L E        
Sbjct: 925  DVDAAGVASVVEEPTLTP----------------HQFPRGASPGTFLHSLFE-------- 960

Query: 1009 ALAAERPRVEDQVARRCNRQGW-TQWIPMLTDWLMALLSQPLALPTSPGSAVSLAGLTQY 1067
             L   +P   + V  +    G+ +QW P+LT+W+ A+L  PL      G ++S       
Sbjct: 961  DLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPL---NETGVSLSQLSARNK 1017

Query: 1068 QVEMEFWFALNQ-VDTQVLDQQVRA--ATLAGEPRAALMREQLNGMLKGFIDLVFEHQGR 1124
            QVEMEF+  +++ +    LD  +R      AG P    M  Q+ GMLKGFIDLVF H+GR
Sbjct: 1018 QVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFM--QVRGMLKGFIDLVFRHEGR 1075

Query: 1125 YYVLDYKSNWLGADVADYDPARMAHAMLDHRYDLQLALYLFALHRLLKSRLPDYDYDRHV 1184
            YY+LDYKSNWLG D + Y    MA AM  HRYDLQ  LY  ALHR L+ R+ DYDYDRH 
Sbjct: 1076 YYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYDRHF 1135

Query: 1185 GGALYLFLRG--SQAPGGGVFAQRPDRALIEALDRLFSGET 1223
            GG +YLFLRG   + P  G++  RP+  LI+ +D +F+G T
Sbjct: 1136 GGVIYLFLRGVDKEHPQQGIYTTRPNAGLIDLMDEMFAGMT 1176