Pairwise Alignments

Query, 681 a.a., exodeoxyribonuclease V subunit alpha from Dickeya dianthicola 67-19

Subject, 608 a.a., exonuclease V (RecBCD complex), alpha chain from Escherichia coli BL21

 Score =  423 bits (1088), Expect = e-122
 Identities = 283/663 (42%), Positives = 370/663 (55%), Gaps = 85/663 (12%)

Query: 22  LRELDRALVRFLHQECPDAPPLLLLGAALVSYQLGRGHVCLDLAATLADSGFSLALPPEG 81
           LR LD   V+F      D  P + L AAL+S+  G GHVCL L+                
Sbjct: 16  LRPLD---VQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLS---------------- 56

Query: 82  DRSENRKIARP--AAVLAGV-TLSAWQAALQQPQLVSSGEGSTPLVLVGARLYLRRYWRY 138
            R EN + + P  A  ++ +  L  W+  L   Q VS G+  TP++L G RLYL R W  
Sbjct: 57  -RLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCN 115

Query: 139 EQDVRHAITQQLTQNHALRAAIAPAVLRQRLDALFPTAAAGPANWQKLACALAAGSAFSI 198
           E+ V     +    NHA+   +  A+L Q LD LFP +     NWQK+A A+A     S+
Sbjct: 116 ERTVARFFNEV---NHAIE--VDEALLAQTLDKLFPVS--DEINWQKVAAAVALTRRISV 168

Query: 199 ITGGPGTGKTTTVVKLLALLQSLALEQHGKPLRIRLAAPTGKAAARLNESIAGAIAGLML 258
           I+GGPGTGKTTTV KLLA L  +A    G+  RIRLAAPTGKAAARL ES+  A+  L L
Sbjct: 169 ISGGPGTGKTTTVAKLLAALIQMA---DGERCRIRLAAPTGKAAARLTESLGKALRQLPL 225

Query: 259 DGLAQGEAIREHINSEVVTLHRLLGSRPDTRHFRHHADNPLMLDVLVVDEASMVDLEMMA 318
                 +  ++ I  +  TLHRLLG++P ++  RHHA NPL LDVLVVDEASM+DL MM+
Sbjct: 226 S-----DEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMS 280

Query: 319 ALLAAMPARSRLILLGDKDQLASVEAGALMGELCQRAAQGHYLPQTRDWLREVAGDAPDD 378
            L+ A+P  +R+I LGD+DQLASVEAGA++G++C  A  G    + R   R      P  
Sbjct: 281 RLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVP-- 338

Query: 379 ALLDPHGSALDQSIAMLRHSYRFGADSGIGQLAEAVNAGDAAALAAVWQHGYADL-ARLT 437
           A      ++L  S+ +L+ SYRFG+DSGIGQLA A+N GD  A+  V+Q  + D+  RL 
Sbjct: 339 AGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLL 398

Query: 438 LTANDNRALREWVIDGAVDRFACQPHAAPPVGYGDYLRRMASTRPALTAAQSEFDVWAAQ 497
            +  D  A+ E  +                 GYG YL         L  A++E D+    
Sbjct: 399 QSGEDYIAMLEEAL----------------AGYGRYL--------DLLQARAEPDL---- 430

Query: 498 ILDAFGQFQLLCALRNGPWGVDSMNERIAHLLYRDGLL--AAWQGWYPGRPVMVTRNDYS 555
           I+ AF ++QLLCALR GP+GV  +NERI   + +   +       WY GRPVM+ RND +
Sbjct: 431 IIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSA 490

Query: 556 QRLMNGDIGITLPVPLLQPDGSRAWVTRVAFPAGDGSSGIRWVLPGRLSAVETVFAMTVH 615
             L NGDIGI L          R   TRV F   DG+  I+ V P RL   ET +AMTVH
Sbjct: 491 LGLFNGDIGIAL---------DRGQGTRVWFAMPDGN--IKSVQPSRLPEHETTWAMTVH 539

Query: 616 KSQGSEFAHTALLLPDCLSPILTRELVYTGITRAKHAFSLGCVGEHSTVLAEAVGRRVLR 675
           KSQGSEF H AL+LP   +P++TRELVYT +TRA+   SL        +L+ A+  R  R
Sbjct: 540 KSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYA---DERILSAAIATRTER 596

Query: 676 VSG 678
            SG
Sbjct: 597 RSG 599