Pairwise Alignments

Query, 628 a.a., DEAD/DEAH family ATP-dependent RNA helicase from Dickeya dianthicola 67-19

Subject, 557 a.a., RNA helicase from Pseudomonas simiae WCS417

 Score =  452 bits (1163), Expect = e-131
 Identities = 264/570 (46%), Positives = 358/570 (62%), Gaps = 29/570 (5%)

Query: 1   MAEFETSFASLGLSAPILSALSELGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60
           M +    FA+  L+  IL+A++  GYE+PS IQ + IP ++ G+D++G AQTG+GKTAAF
Sbjct: 1   MTQETGGFAAFNLNPNILAAVAATGYEEPSAIQQQSIPIIMAGKDMIGQAQTGTGKTAAF 60

Query: 61  SLPLLNNIKAELKAPQLLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGGQRYDVQLR 120
           +LP+L+ I    + PQ L+LAPTRELA+QVA A   ++K M GV VVA+YGG     QL+
Sbjct: 61  ALPILHCIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK 120

Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAE 180
           A+R G QIVV TPGRL DHL+R    LS ++ LVLDEADEML++GF++D+E I   +P  
Sbjct: 121 AIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPT 180

Query: 181 HQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALIRFL 240
            QT LFSAT+P++IR I  R ++DP+ V+IQ+   T   I Q++  V+  +K  A++  L
Sbjct: 181 RQTVLFSATLPQSIRAIAERHLRDPEHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL 240

Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 300
           E EDFDA I+FVRTK ATL++A ALE  GY +AALNGD+ Q  RE+ ++ LKDGRLDI++
Sbjct: 241 EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV 300

Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360
           ATDVAARGLDV RI+ V N D+P D ESYVHRIGRTGRAGR GRALL V  RERR+L+ I
Sbjct: 301 ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI 360

Query: 361 ERTMKLTIPEVDLPNAELLGQRRLAQFAAKVQQQLESSDLDMYRALLGKLRPQEELDIET 420
           ER     + EV LP+A+ +   R+ +    +   +  ++   +  LL +L          
Sbjct: 361 ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAE-STHGDLLDRLTADIGCTPRA 419

Query: 421 LAAALLKMA-----------QGERPLVLPPESAVERRPRREFRERDERFERRGDRNERAP 469
           LAAALL+ A           + ERPLV  P SA    PR +  ER      RGDR  RAP
Sbjct: 420 LAAALLRKATNGQALTLAAIEKERPLV--PNSA----PRGDRPERSGDRPDRGDRERRAP 473

Query: 470 RSSDERPARRERRDVGEMDLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASH 529
               E  AR            R  +G  DG+  ++++GAI NEG ++   IG I++  S 
Sbjct: 474 VPLAEGRAR-----------CRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSF 522

Query: 530 STIELPKGMPGDLLSHFTRTRILNKPMNMQ 559
           S +ELP+     LL+    TR+  K + ++
Sbjct: 523 SLVELPEDGLEKLLAKLKDTRVAGKQLKLR 552