Pairwise Alignments

Query, 628 a.a., DEAD/DEAH family ATP-dependent RNA helicase from Dickeya dianthicola 67-19

Subject, 629 a.a., DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 1011 bits (2613), Expect = 0.0
 Identities = 534/627 (85%), Positives = 564/627 (89%), Gaps = 12/627 (1%)

Query: 1   MAEFETSFASLGLSAPILSALSELGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60
           MAEFET+FA LGL APIL AL++LGYEKPSPIQAECIPHLL GRDVLGMAQTGSGKTAAF
Sbjct: 1   MAEFETTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAF 60

Query: 61  SLPLLNNIKAELKAPQLLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGGQRYDVQLR 120
           SLPLLNN+  ELKAPQ+LVLAPTRELAVQVAEA  +FSKHM+GVNVVALYGGQRYDVQLR
Sbjct: 61  SLPLLNNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120

Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAE 180
           ALRQGPQIVVGTPGRLLDHLKRGTLDLS LSGLVLDEADEMLRMGFIEDVE IMAQIP  
Sbjct: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180

Query: 181 HQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALIRFL 240
           HQTALFSATMPEAIRRITRRFMK+PQEVRIQSSVTTRPDISQSYWTV+GMRKNEAL+RFL
Sbjct: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240

Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 300
           EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360
           ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 ERTMKLTIPEVDLPNAELLGQRRLAQFAAKVQQQLESSDLDMYRALLGKLRPQ---EELD 417
           ERTMKLTIPEV+LPNAELLG+RRL +FAAKVQQQLESSDLD YRALL K++P    EELD
Sbjct: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSAEGEELD 420

Query: 418 IETLAAALLKMAQGERPLVLPPESAVERRPRREFRERDERFERRGDRNERAPRSSDERPA 477
           +ETLAAALLKMAQGERPL+LPP++ +  RP+REFR+RD+R  R  DRN+R PR   E   
Sbjct: 421 LETLAAALLKMAQGERPLILPPDAPM--RPKREFRDRDDRGPR--DRNDRGPRGDREERP 476

Query: 478 RRERRDVGEMDLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKG 537
           RRERRDVG+M LYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKG
Sbjct: 477 RRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKG 536

Query: 538 MPGDLLSHFTRTRILNKPMNMQLMGDAQPHERRERREGGE--RGE-RSGARGF-GERAGT 593
           MPG++L HFTRTRILNKPMNMQL+GDA PH   ERR GG    GE R G R F GER   
Sbjct: 537 MPGEVLQHFTRTRILNKPMNMQLLGDAVPHAGGERRGGGRSFSGERREGGRNFSGERREG 596

Query: 594 GSGRGRPLNGERREG-GERRGSRDGQR 619
           G G GR  +GERRE  G RR    G+R
Sbjct: 597 GRGDGRRFSGERRESRGPRRDDSTGRR 623