Pairwise Alignments

Query, 639 a.a., ATP-dependent DNA helicase from Dickeya dadantii 3937

Subject, 714 a.a., putative Helicase from Pseudomonas putida KT2440

 Score =  221 bits (562), Expect = 1e-61
 Identities = 203/701 (28%), Positives = 306/701 (43%), Gaps = 107/701 (15%)

Query: 21  RGFQPREPQRQMAAAVLEAID----------AKKPLVV--EAGTGTGKTYAYLAPAL--- 65
           +  +PR  QR M A V + +           A +P VV  EAGTGTGKT AY   A+   
Sbjct: 21  KSLKPRYGQRLMIAEVAKVLGDIACDDEGRRAGEPAVVAVEAGTGTGKTVAYSLAAIPAA 80

Query: 66  -RSGKKVIVSTGSRALQDQLYSRDLPTVANALNFQGKLALLKGRSNYLCIERLEQQSLAG 124
             +GK+++++T + ALQ+Q+  +DLP +  +       AL KGR  YLC+ +L+     G
Sbjct: 81  KAAGKRLVIATATVALQEQIVFKDLPDLMRSSGLNFSFALAKGRGRYLCLSKLDILLQEG 140

Query: 125 GDLGRDVLRELVRLRGWSSETE-------------------DGDISQCGDVAEDSPVWPL 165
               +    +L    G+  E +                   DGD     +  ED   W  
Sbjct: 141 H--AQSATAQLFEEEGFRIEVDERSQKLFNSMIEKLAGNRWDGDRDSWPEALEDQD-WAR 197

Query: 166 VTSTNDNCLGSDCPHYKECFVVKARRRAMDADVVVVNHHLYLADMVVKESGFAELIPD-- 223
           +T+ +  C G  CP++++C   KAR      DV+V NH + LAD+ +   G   ++PD  
Sbjct: 198 LTTDHSQCTGRHCPNFQQCVFYKAREGMGKVDVIVTNHDMVLADLAL---GGGAVLPDPR 254

Query: 224 SDVVIFDEAHQIPDIASQYFGQQLSSRQLLD----LAKDIVIA------------YRTEV 267
             + +FDE H +PD A  +F      R   D     AK++               Y  +V
Sbjct: 255 DTMYVFDEGHHLPDKAIGHFAHYSRLRSTADWLEQTAKNLTKLLAQHPLPGDLGKYIEQV 314

Query: 268 ----RDASQLQKSADRLSQSTQDFRLALGDPG-------FRGN-----LRDIVTDNMLQR 311
               R+    Q+    L +   DFR +    G       F G      +R++  +  L++
Sbjct: 315 PELAREVRTQQQFMFTLCEQVADFRPSEDTEGRERPRYRFEGGVVPEQIREVGIE--LKK 372

Query: 312 SLTLLDDALELCCDVAKLSLGRSALLDAAFERATLYRARLKRLRDVQQPGYSYWYECNS- 370
               L+D      D+ K  +     +  A  +A  +      L    Q  +  W    + 
Sbjct: 373 GFARLNDLFTRLADLLKEGMDGEVNIGIASHQAEEWYPLFGSLVTRAQGNWELWTAFTAE 432

Query: 371 ---------RHFVLA-----------LTPLSVADRFRDVMKEKPACWVFTSATLSVNDQL 410
                    R   LA            +P+  AD  R  +       + TSATL+   + 
Sbjct: 433 DPEDSPPMARWLTLAESGALFDIEVNASPILAADMLRRSLWSVAHGALVTSATLTALGKF 492

Query: 411 THFIDRLGLDQ-ARTLLLPSPFDYARQALLCVPRYLPETNRPGAAKQLA--RMLRPLIEA 467
             F  R GL + A T ++PSPF +    LL VP  L    R  AA   A  R L  ++E 
Sbjct: 493 DRFRMRSGLPRDAVTCVVPSPFVHGDAGLLRVPD-LQADPRDAAAHTAAIIRELPNIVED 551

Query: 468 NQGRCFMLCTSHQMMRDLAAEFRASLTLPVLVQGETSKPQLLAQFLA----AGNALLVAT 523
            +G   +L +S + M+D+           VL+QG  SK + L +  A      +++L   
Sbjct: 552 ARG-ALVLFSSRKQMQDVFDGLDRDWRKLVLIQGNLSKQETLNKHKARVDDGQHSVLFGL 610

Query: 524 GSFWEGVDVRGDALSCVIIDKLPFTSPDDPLLKARMEDCRVRGGDPFDEVQLPDAVITLK 583
            SF EGVD+ G     V+I K+PF  PDDP+  A  E    RGG+PF E+ +PDA + L 
Sbjct: 611 ASFAEGVDLPGAYCEHVVIAKIPFAVPDDPVEAALAEWIEARGGNPFMEIAVPDASLKLI 670

Query: 584 QGVGRLIRDVEDRGVLVICDNRLVTRPYGEVFLTSLPPAPR 624
           Q  GRL+R  +DRGV+ + D RLVT+ YG+  L +LPP  R
Sbjct: 671 QACGRLLRTEQDRGVITLLDRRLVTQRYGKAILNALPPFRR 711