Pairwise Alignments

Query, 681 a.a., exodeoxyribonuclease V subunit alpha from Dickeya dadantii 3937

Subject, 608 a.a., exonuclease V (RecBCD complex), alpha chain from Escherichia coli BL21

 Score =  421 bits (1083), Expect = e-122
 Identities = 283/669 (42%), Positives = 373/669 (55%), Gaps = 85/669 (12%)

Query: 17  VECGWLRELDRALVRFLHQECPEASSLLLLGAALVSYQLGRGHVCLDLDATLADSGFSLA 76
           VE   LR LD   V+F      +    + L AAL+S+  G GHVCL L            
Sbjct: 11  VEHKQLRPLD---VQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLS----------- 56

Query: 77  LPPEGDRSENRKIARP--AEVLAGV-TLSAWQAALQQPQLVSSGEGSTPLVLVGARLYLR 133
                 R EN + + P  A  ++ +  L  W+  L   Q VS G+  TP++L G RLYL 
Sbjct: 57  ------RLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLN 110

Query: 134 RYWRYEQDVRHAITQQLTQNDALRAAITPAALRQRLDALFPAAAAGSANWQKLACALAAG 193
           R W  E+ V     +    N A+   +  A L Q LD LFP +     NWQK+A A+A  
Sbjct: 111 RMWCNERTVARFFNEV---NHAIE--VDEALLAQTLDKLFPVS--DEINWQKVAAAVALT 163

Query: 194 SAFSIITGGPGTGKTTTVVKLLALLQSLALEQHGKPLRIRLAAPTGKAAARLNESIAGAI 253
              S+I+GGPGTGKTTTV KLLA L  +A    G+  RIRLAAPTGKAAARL ES+  A+
Sbjct: 164 RRISVISGGPGTGKTTTVAKLLAALIQMA---DGERCRIRLAAPTGKAAARLTESLGKAL 220

Query: 254 AGLTLDGLAQGEAIREQINSEVVTLHRLLGSRPDTRHFRHHADNPLMLDVLVVDEASMVD 313
             L L      +  +++I  +  TLHRLLG++P ++  RHHA NPL LDVLVVDEASM+D
Sbjct: 221 RQLPLS-----DEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMID 275

Query: 314 LEMMAALLAAMPARSRLILLGDKDQLASVEAGALMGELCQRAAQGHYLPQTRDWLREVAG 373
           L MM+ L+ A+P  +R+I LGD+DQLASVEAGA++G++C  A  G    + R   R    
Sbjct: 276 LPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGT 335

Query: 374 DAPDDSLLDPQGSALDQSIAMLRHSYRFGADSGIGQLAEAVNAGDAAALASVWRQGYADL 433
             P  +    + ++L  S+ +L+ SYRFG+DSGIGQLA A+N GD  A+ +V++Q + D+
Sbjct: 336 HVPAGT--GTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDI 393

Query: 434 -ARLTLTANDNRALREWVIDGAADRFGAQPAAAAPVGYGDYLRRMASTRPALTAPQSEFD 492
             RL  +  D  A+ E                 A  GYG YL         L   ++E D
Sbjct: 394 EKRLLQSGEDYIAMLE----------------EALAGYGRYL--------DLLQARAEPD 429

Query: 493 MWAAQILDAFGQFQLLCALRNGPWGVDSMNERIAQLLYRDGLL--AAWQGWYPGRPVMVT 550
           +    I+ AF ++QLLCALR GP+GV  +NERI Q + +   +       WY GRPVM+ 
Sbjct: 430 L----IIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIA 485

Query: 551 RNDYSQRLMNGDIGITLQVPLLQPDGSWGWATRVAFPAGDGSSGIRWVLPGRLSAVETVF 610
           RND +  L NGDIGI L           G  TRV F   DG+  I+ V P RL   ET +
Sbjct: 486 RNDSALGLFNGDIGIAL---------DRGQGTRVWFAMPDGN--IKSVQPSRLPEHETTW 534

Query: 611 AMTVHKSQGSEFAHTALLLPDSLSPILTRELVYTGITRAKHAFSLGCVGEHSTVLAEAVG 670
           AMTVHKSQGSEF H AL+LP   +P++TRELVYT +TRA+   SL        +L+ A+ 
Sbjct: 535 AMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYA---DERILSAAIA 591

Query: 671 RRVLRVSGL 679
            R  R SGL
Sbjct: 592 TRTERRSGL 600