Pairwise Alignments

Query, 243 a.a., porin from Dickeya dadantii 3937

Subject, 230 a.a., N-acetylneuraminic acid outer membrane channel protein NanC from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  134 bits (336), Expect = 2e-36
 Identities = 85/245 (34%), Positives = 125/245 (51%), Gaps = 17/245 (6%)

Query: 1   MKFKILTMMVASVVSMSS--MAVTFDYRHEMKDTQNANHQDRLLISHRFENGFGLSSEVK 58
           MK     + + S ++ SS   A T DYRHE  D    N +DR+ I  +  NG G   +  
Sbjct: 1   MKINKYLLGMVSFIAFSSYLQAATLDYRHEYADRTRIN-KDRIAIIEKLPNGIGFYVDAS 59

Query: 59  WKQSSNDNTPNKPYNEQVSNGTEVTASYLYKFDKMFNVEAGFNLVTDSSTNSYRPYIRGG 118
            K    D   +K  ++ V+N  E+  SY YK    F ++ GF   +   T+ Y+PY+RG 
Sbjct: 60  VKSGGVDGEQDKHLSDLVANAIELGVSYNYKVTDNFVLQPGFIFESGPDTSIYKPYLRGQ 119

Query: 119 VNFTDSLYYTLRYRPFYKRYSGSINTTPPAEATNMKGYTITSVLGYKFLDNFTVEYELEY 178
            NF   +Y   RYR  Y R + + +     E TN       + +GY F D   +EY   +
Sbjct: 120 YNFDSGVYMAGRYRYDYARKTANYSDD---EKTN----RFDTYIGYVF-DELKLEYNFTW 171

Query: 179 NKNTKAGNFGYIYDNDNDNLTHDVKLAYKIDKNWTPYIQVANVEGPSKTTDERQTRYRVG 238
             + +       +DN   N  H+V LA+K++K++TPY++V NV      TDERQTRYRVG
Sbjct: 172 MDSDQIK-----FDNKKTNYEHNVALAWKLNKSFTPYVEVGNV-AVRNNTDERQTRYRVG 225

Query: 239 VQYNF 243
           +QY+F
Sbjct: 226 LQYHF 230