Pairwise Alignments

Query, 243 a.a., porin from Dickeya dadantii 3937

Subject, 223 a.a., Oligogalacturonide-Rhamnogalacturonide-specific porin from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  115 bits (288), Expect = 7e-31
 Identities = 84/240 (35%), Positives = 122/240 (50%), Gaps = 19/240 (7%)

Query: 4   KILTMMVASVVSMSSMAVTFDYRHEMKDTQNANHQDRLLISHRFENGFGLSSEVKWKQSS 63
           K L +++  VV+ ++ AV  D RHE  D   AN+ DR  ISHRF NG G + E   K   
Sbjct: 3   KSLFLLLPLVVT-NAHAVYVDVRHEYLDDSKANY-DRAYISHRFANGVGFAIEAISKSGG 60

Query: 64  NDNTPNKPYNEQVSNGTEVTASYLYKFDKMFNVEAGFNLVTDSSTNSYRPYIRGGVNFTD 123
           +D   NK +N+  + G E T SY +K   +   + GF L T +  ++Y+PY R      +
Sbjct: 61  DDT--NKAFNDLETQGNEYTISYQFKTGDVA-WQPGFVLETGNGYSTYKPYFRATWTLNE 117

Query: 124 SLYYTLRYRPFYKRYSGSINTTPPAEATNMKGYTITSVLGYKFLDNFTVEYELEYNKNTK 183
           S +   RYR  Y R S  I         ++         GYK+ +NF    E  Y K  K
Sbjct: 118 SWWVGARYRFEYVRRSSDIRDDDTINRMDVWA-------GYKW-NNFDWTIEGIYKKADK 169

Query: 184 AGNFGYIYDNDNDNLTHDVKLAYKIDKNWTPYIQVANVEGPSKTTDERQTRYRVGVQYNF 243
                 +YD   DN  ++ + AY ID+ W+P+++V NV   +  +DERQTR+RVG+ Y F
Sbjct: 170 YD----LYDGGKDNYEYNFRTAYIIDQ-WSPFVEVGNV-SVNSNSDERQTRFRVGIGYTF 223