Pairwise Alignments

Query, 243 a.a., porin from Dickeya dadantii 3937

Subject, 238 a.a., N-acetylnuraminic acid outer membrane channel protein from Escherichia coli BL21

 Score = 51.2 bits (121), Expect = 2e-11
 Identities = 65/252 (25%), Positives = 106/252 (42%), Gaps = 30/252 (11%)

Query: 2   KFKILTMMVASVVS--MSSMAVTFDYRHEMKDTQNANHQDRLLISHRFENGFGLSSEVKW 59
           K KIL+ ++    S  + S A T D R   +   +A ++ RL +S  ++NG+  S E   
Sbjct: 3   KAKILSGVLLLCFSSPLISQAATLDVRGGYRSGSHA-YETRLKVSEGWQNGWWASMESNT 61

Query: 60  KQSSNDNTPNKPYNEQVSNGTEVTASYLYKFDKMFNVEAGFNLVTDSSTNSYRPYIRGGV 119
             + +DN   K  N  + N  +V  +Y  K D  + V  G      S+   Y PY++   
Sbjct: 62  WNTIHDN---KKENAAL-NDVQVEVNYAIKLDDQWTVRPGMLTHFSSNGTRYGPYVKLSW 117

Query: 120 NFTDSLYYTLRYRPFYKRY-----SGSINTTPPAEATNMKGYTITSVLGYKFLDNFTVEY 174
           + T  L + +RYR  +K Y     SG ++           GY     + Y    +FT  +
Sbjct: 118 DATKDLNFGIRYRYDWKAYRQQDLSGDMSRD---NVHRWDGY-----VTYHINSDFTFAW 169

Query: 175 ELE-YNKNTKAGNFGYIYDNDNDNLTHDV-KLAYKIDKNWTPYIQ--VANVEGPSKTTDE 230
           +   Y+K        Y Y N     T +   L Y +  + TPYI+    + +G     D 
Sbjct: 170 QTTLYSKQN-----DYRYANHKKWATENAFVLQYHMTPDITPYIEYDYLDRQGVYNGRDN 224

Query: 231 -RQTRYRVGVQY 241
             +  YR+GV +
Sbjct: 225 LSENSYRIGVSF 236