Pairwise Alignments

Query, 576 a.a., single-stranded-DNA-specific exonuclease RecJ from Dickeya dadantii 3937

Subject, 571 a.a., exonuclease RecJ from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score =  641 bits (1653), Expect = 0.0
 Identities = 332/572 (58%), Positives = 417/572 (72%), Gaps = 5/572 (0%)

Query: 6   QLRRRPTAETELP--DSLPALLRRLYAQRGVRQMQELERSLRGLLDYRLLGGITQAVEVL 63
           ++  RP  +T LP    LP LL RLYA RGV    EL++SL  L+ Y+ L GI  AV++L
Sbjct: 2   RIEPRPLPDT-LPFLGDLPPLLTRLYAARGVACEAELDKSLARLIPYQQLKGIDAAVDLL 60

Query: 64  RQALADNRRIVIVGDFDADGATSTALTVLALRSMGGREVQYLVPNRFEDGYGLSPEVVAQ 123
             AL + +R++IVGDFDADGAT++ + VL LR +G   V YLVPNRFE GYGL+PE+V  
Sbjct: 61  VTALREGQRMLIVGDFDADGATASTVGVLGLRLLGAVHVDYLVPNRFEYGYGLTPEIVEV 120

Query: 124 AAAKGAELIVTVDNGISSHAGVDDAHRRGIAVVVTDHHLPGETLPAAEAMINPNLSDCAF 183
           A  +  +L++TVDNGISS  GV  A   G+ V+VTDHHLPG  LPAA+A++NPN   C F
Sbjct: 121 ALQREPQLLITVDNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTF 180

Query: 184 PSKALAGVGVAFYLMMALRANLRECGWFAERGLAEPNLAELLDLVALGTVADVVPLDANN 243
           PSK+LAGVGV FY++MALRA LRE GWF     A+PNL ELLDLVALG+VADVVPLDANN
Sbjct: 181 PSKSLAGVGVIFYVLMALRARLRETGWFESNQRAQPNLGELLDLVALGSVADVVPLDANN 240

Query: 244 RILISQGLSRIRAGKCRPGIRALLEVSNRDAAQLVASDLGFALGPRLNAAGRLDDMSVGV 303
           RIL+ QGL RIRAG+ RPG+RA+LEV+ R+ +++ ++DLGF LGPRLNAAGRLDDMS+G+
Sbjct: 241 RILVHQGLMRIRAGRARPGLRAILEVARREPSRITSTDLGFILGPRLNAAGRLDDMSLGI 300

Query: 304 ELLLCNDIVQARMLASDLDALNQSRREIEAGMQVEALHLCEQLERSRDTLPLGLAMYHPQ 363
           E LLC+D   AR +A  LD LNQ R+ IE GMQ EAL   + L    +++P GL ++  +
Sbjct: 301 ECLLCDDPTLAREMAVQLDELNQDRKSIEQGMQREALAQLKDL--PLESMPFGLCLFDAE 358

Query: 364 WHQGVVGILASRIKERFHRPVIAFAPAGDGILKGSGRSIAGLHLRDALERLDTCHPGLML 423
           WHQGV+GILASR+KER+HRP IAFA AG+G+LKGS RS+ G H+RDAL+ +   HP L+ 
Sbjct: 359 WHQGVIGILASRLKERYHRPTIAFASAGEGVLKGSARSVPGFHIRDALDAVAASHPHLIS 418

Query: 424 KFGGHAMAAGLSLVEDRFDEFRQRFADLVGEWLDASQLEGVVWSDGELASPELTLGTAEM 483
           KFGGHAMAAGLSL E+ F  F   F   V   LD   L G + SDG LA  E  L  A  
Sbjct: 419 KFGGHAMAAGLSLPEENFPAFAAAFDQEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARA 478

Query: 484 LREAGPWGQAFPEPTFDGRFRLLQQRLVGERHLKVMVEPLGGGPLLDGIAFNVDTLLWPD 543
           LR AGPWGQ FPEP F G F+L++QR+VGERHLK++++   G   LDGIAF VD  +WP+
Sbjct: 479 LRNAGPWGQHFPEPLFHGVFQLVEQRVVGERHLKMVLKTECGSVKLDGIAFGVDRDIWPN 538

Query: 544 SSVREVELAYKLDVNEFRGKRSVQLLIEHLWP 575
            ++R VELAYKLD+NEFRG  +VQL++ H+ P
Sbjct: 539 PNIRWVELAYKLDLNEFRGNETVQLMVVHIAP 570