Pairwise Alignments

Query, 576 a.a., single-stranded-DNA-specific exonuclease RecJ from Dickeya dadantii 3937

Subject, 569 a.a., single-stranded-DNA-specific exonuclease RecJ from Pseudomonas sp. SVBP6

 Score =  634 bits (1634), Expect = 0.0
 Identities = 330/555 (59%), Positives = 408/555 (73%), Gaps = 4/555 (0%)

Query: 21  LPALLRRLYAQRGVRQMQELERSLRGLLDYRLLGGITQAVEVLRQALADNRRIVIVGDFD 80
           LP LL RLYA RGV+   EL++SL  LL Y+ L GI  AV++L  ALA+ +RI+IVGDFD
Sbjct: 18  LPPLLTRLYAARGVQSAAELDKSLARLLPYQQLKGIEAAVDLLVTALAERQRILIVGDFD 77

Query: 81  ADGATSTALTVLALRSMGGREVQYLVPNRFEDGYGLSPEVVAQAAAKGAELIVTVDNGIS 140
           ADGAT++ + VL LR +G   V YLVPNRFE GYGL+PE+V  A  +  +L++TVDNGIS
Sbjct: 78  ADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQRQPQLLITVDNGIS 137

Query: 141 SHAGVDDAHRRGIAVVVTDHHLPGETLPAAEAMINPNLSDCAFPSKALAGVGVAFYLMMA 200
           S  GV  A   G+ V+VTDHHLPG  LPAA+A++NPN   C FPSKALAGVGV FY++MA
Sbjct: 138 SVEGVAAAKAAGLKVLVTDHHLPGHELPAADAIVNPNQPGCEFPSKALAGVGVIFYVLMA 197

Query: 201 LRANLRECGWFAERGLAEPNLAELLDLVALGTVADVVPLDANNRILISQGLSRIRAGKCR 260
           LRA LR  G +     A+PN+ ELLDLVALG+VADVVPLDANNRIL+ QGL RIRAG+ R
Sbjct: 198 LRARLRSLGHYDNA--AQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAGRAR 255

Query: 261 PGIRALLEVSNRDAAQLVASDLGFALGPRLNAAGRLDDMSVGVELLLCNDIVQARMLASD 320
           PG++A+LEV+ RD A++ ++DLGF LGPRLNAAGRLDDMS+G+E LL +D   AR +A  
Sbjct: 256 PGLKAILEVARRDHARITSTDLGFILGPRLNAAGRLDDMSLGIECLLSDDANLAREMAGQ 315

Query: 321 LDALNQSRREIEAGMQVEALHLCEQLERSRDTLPLGLAMYHPQWHQGVVGILASRIKERF 380
           LD LNQ R+ IE GMQ EAL   + L    +++P GL ++ P WHQGV+GILASR+KER+
Sbjct: 316 LDELNQDRKSIEQGMQREALAQLKDLPL--ESMPFGLCLFEPDWHQGVIGILASRLKERY 373

Query: 381 HRPVIAFAPAGDGILKGSGRSIAGLHLRDALERLDTCHPGLMLKFGGHAMAAGLSLVEDR 440
           HRP IAFA AG+G+LKGS RS+ G H+RDAL+ +   HP L+ KFGGHAMAAGLSL  + 
Sbjct: 374 HRPTIAFADAGEGMLKGSARSVPGFHIRDALDAVAARHPQLISKFGGHAMAAGLSLPAEN 433

Query: 441 FDEFRQRFADLVGEWLDASQLEGVVWSDGELASPELTLGTAEMLREAGPWGQAFPEPTFD 500
           F  F Q F +     L    L G + SDG LA  E  L  A  LR AGPWGQ FPEP F 
Sbjct: 434 FPAFAQAFDEETRRQLREEDLTGRLLSDGTLAVEEFHLELARALRHAGPWGQHFPEPLFH 493

Query: 501 GRFRLLQQRLVGERHLKVMVEPLGGGPLLDGIAFNVDTLLWPDSSVREVELAYKLDVNEF 560
           G F+L++QR+VGERHLKV+++   G   LDGIAF +D  +WP+ +VR VELAYKLDVNEF
Sbjct: 494 GVFQLVEQRVVGERHLKVVLKSECGSLKLDGIAFGIDREVWPNPTVRWVELAYKLDVNEF 553

Query: 561 RGKRSVQLLIEHLWP 575
           RG+ SVQL+I H+ P
Sbjct: 554 RGQESVQLMIAHIEP 568