Pairwise Alignments

Query, 576 a.a., single-stranded-DNA-specific exonuclease RecJ from Dickeya dadantii 3937

Subject, 569 a.a., single-stranded-DNA-specific exonuclease RecJ from Pseudomonas fluorescens SBW25

 Score =  637 bits (1644), Expect = 0.0
 Identities = 329/555 (59%), Positives = 411/555 (74%), Gaps = 4/555 (0%)

Query: 21  LPALLRRLYAQRGVRQMQELERSLRGLLDYRLLGGITQAVEVLRQALADNRRIVIVGDFD 80
           LP LL RLYA RGV+   EL++SL  L+ Y+ L GI  AV++L  AL   +RI+IVGDFD
Sbjct: 18  LPPLLTRLYAARGVQSEAELDKSLARLIPYQRLKGIDAAVDLLVTALEQRQRILIVGDFD 77

Query: 81  ADGATSTALTVLALRSMGGREVQYLVPNRFEDGYGLSPEVVAQAAAKGAELIVTVDNGIS 140
           ADGAT++ +  L LR +G   V YLVPNRFE GYGL+PE+VA A  +  +L++TVDNGIS
Sbjct: 78  ADGATASTVGTLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVAVALQREPQLLITVDNGIS 137

Query: 141 SHAGVDDAHRRGIAVVVTDHHLPGETLPAAEAMINPNLSDCAFPSKALAGVGVAFYLMMA 200
           S  GV  A   G+ V+VTDHHLPG+ LPAA+A++NPN   C FPSKALAGVGV FY++MA
Sbjct: 138 SVEGVAAAKAAGLKVLVTDHHLPGDELPAADAIVNPNQPGCEFPSKALAGVGVIFYVLMA 197

Query: 201 LRANLRECGWFAERGLAEPNLAELLDLVALGTVADVVPLDANNRILISQGLSRIRAGKCR 260
           LRA LR  GW+  +   +PN+ ELLDLVALG+VADVVPLDANNRIL+ QGL RIRAG+ R
Sbjct: 198 LRARLRSLGWYEHK--PQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAGRAR 255

Query: 261 PGIRALLEVSNRDAAQLVASDLGFALGPRLNAAGRLDDMSVGVELLLCNDIVQARMLASD 320
           PGI+A+LEV+ RDAA++ ++DLGF LGPRLNAAGRLDDMS+G+E LL  D+  AR +A+ 
Sbjct: 256 PGIKAILEVAKRDAARITSTDLGFILGPRLNAAGRLDDMSLGIECLLTTDVAAAREMAAQ 315

Query: 321 LDALNQSRREIEAGMQVEALHLCEQLERSRDTLPLGLAMYHPQWHQGVVGILASRIKERF 380
           LD +NQ R+ IE GMQ EAL   + L    +++P GL ++ P+WHQGV+GILASR+KER+
Sbjct: 316 LDGMNQDRKSIEQGMQREALAQLKDLPV--ESMPYGLCLFDPEWHQGVIGILASRMKERY 373

Query: 381 HRPVIAFAPAGDGILKGSGRSIAGLHLRDALERLDTCHPGLMLKFGGHAMAAGLSLVEDR 440
            RP IAFA AGDG+LKGSGRS+ G H+RDAL  + + HP L+ K+GGHAMAAGL+L E+ 
Sbjct: 374 FRPTIAFADAGDGLLKGSGRSVPGFHIRDALAVVASQHPHLIAKYGGHAMAAGLTLPEEN 433

Query: 441 FDEFRQRFADLVGEWLDASQLEGVVWSDGELASPELTLGTAEMLREAGPWGQAFPEPTFD 500
           F  F + F   V   L    L G + SDG LA  E  L  A  LR AGPWGQ FPEP F 
Sbjct: 434 FPLFAEAFDAEVRRQLREEDLTGRLLSDGTLAVEEFHLELARALRHAGPWGQHFPEPLFH 493

Query: 501 GRFRLLQQRLVGERHLKVMVEPLGGGPLLDGIAFNVDTLLWPDSSVREVELAYKLDVNEF 560
           G F+L++QR+VGERHLKV+++   G   LDGIAF VD  +WP+ +VR VELAYKLDVNEF
Sbjct: 494 GVFQLVEQRVVGERHLKVVLKSECGSVKLDGIAFGVDREVWPNPTVRWVELAYKLDVNEF 553

Query: 561 RGKRSVQLLIEHLWP 575
           RG  +VQL+I H+ P
Sbjct: 554 RGNETVQLMIAHIEP 568