Pairwise Alignments

Query, 456 a.a., Superfamily II DNA and RNA helicases from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 455 a.a., ATP-dependent RNA helicase RhlE from Escherichia coli ECRC99

 Score =  289 bits (739), Expect = 1e-82
 Identities = 165/460 (35%), Positives = 261/460 (56%), Gaps = 23/460 (5%)

Query: 5   NFETFNFNESLQEGLDAMGFNKPTPIQQEAIPEILKGKDLIACAQTGTGKTAAFILPILH 64
           +F++   +  +   +   G+ +PTPIQQ+AIP +L+G+DL+A AQTGTGKTA F LP+L 
Sbjct: 2   SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61

Query: 65  KIAE-----KGDNQFNTLIIAPTRELAIQIDQQIQGLAYFVGVSSIAIYGGGDGLVWEQQ 119
            +       KG      LI+ PTRELA QI + ++  + ++ + S+ ++GG   +    Q
Sbjct: 62  HLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGG---VSINPQ 118

Query: 120 KKALEHGTEIVVATPGRLIALLAGGKIKLDTLEHLVLDEADRMLDMGFSDDILKIINYLP 179
              L  G +++VATPGRL+ L     +KLD +E LVLDEADRMLDMGF  DI +++  LP
Sbjct: 119 MMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLP 178

Query: 180 KNRQTVLFSATMPPKIRQFSKKIVTDPHEINIAISKTA-EGVTQRIYMAHDSQKESLLEH 238
             RQ +LFSAT    I+  ++K++ +P EI +A   TA + VTQ ++     +K  LL H
Sbjct: 179 AKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSH 238

Query: 239 ILTQKNYEAVIVFASTKDKVKSIFKTLKKK-FKVEAFHSDLSQEERETIMSNFKNKTLKI 297
           ++ + N++ V+VF  TK     + + L K   +  A H + SQ  R   +++FK+  +++
Sbjct: 239 MIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRV 298

Query: 298 LIGTDIISRGIDVEGIELVINYDTPSDPEDYVHRVGRTARADKKGEAITFVNEKDLFKLH 357
           L+ TDI +RG+D+E +  V+NY+ P+ PEDYVHR+GRT RA   GEA++ V   +   L 
Sbjct: 299 LVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLR 358

Query: 358 KTQNLIGLEIPRVDLP-----EELGTGPEYREPNARKGNAPSKGNFKKGTQKKQKPRNPR 412
             + L+  EIPR+ +P       +   P       R G    +G   +G Q+      PR
Sbjct: 359 DIEKLLKKEIPRIAIPGYEPDPSIKAEPIQNGRQQRGGGGRGQGGGGRGQQQ------PR 412

Query: 413 KNVQNKATQTSKDSPKPNAKKPASSSKENGQQSGKFRTRR 452
           +      + ++K + KP+ +     +K  G+Q  + R R+
Sbjct: 413 RGEGGAKSASAKPAEKPSRR--LGDAKPAGEQQRRRRPRK 450