Pairwise Alignments

Query, 693 a.a., Topoisomerase IA from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 873 a.a., DNA topoisomerase I from Pseudomonas simiae WCS417

 Score =  117 bits (293), Expect = 2e-30
 Identities = 150/620 (24%), Positives = 244/620 (39%), Gaps = 112/620 (18%)

Query: 4   VIAEKPSVAREIASLLGATEKKEGHLTGNGYFVTWAFGHLVGL---GMPEDYGITGFDKA 60
           VI E P+ A+ I   LG           N Y V  + GH+  L   G           + 
Sbjct: 6   VIVESPAKAKTINKYLG-----------NEYVVKSSIGHIRDLPTSGSASASKEPAAKRG 54

Query: 61  ALPILPHPFLLAVRKVKK----------DKG----YTTDAGAIKQLKIIEQLFNRSDGII 106
                  P L    K +K          D G    Y    G  K ++ + +L   +D I 
Sbjct: 55  KAAAGEGPVLTPKEKARKQLVSRMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIY 114

Query: 107 VATDAGREGELIFRYIYEYLKCIKP-FQRLWISSLTEKAIKQGFDNLKDGKEFDGLYQAA 165
           +ATD  REGE I  ++ E +      ++R+  + +T+KAI++ F   K G+       A 
Sbjct: 115 LATDLDREGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFS--KPGELDIDRVNAQ 172

Query: 166 QGRSRADWLVGINATQALSIAAGNGVYSLGRVQTPTLALICRRYLENKNFSVQKYWQIQ- 224
           Q R   D +VG   +  L      G+ S GRVQ+  + L+  R  E + F  ++YW++  
Sbjct: 173 QARRFLDRVVGYMVSPLLWAKIARGL-SAGRVQSVAVKLVVEREREIRAFIPEEYWEVHA 231

Query: 225 -LSHTKEFIEFKSLSKNKWD-----NQKLAKDTLKSIERNGNTAAVTSVETKNVTEQPPL 278
            L   K       +++ K +     N+  A   L+ ++   ++ ++   E K  + +P  
Sbjct: 232 DLGTAKGANVRFEVAREKGEAFKPLNEAQAMAALEKLK--SSSYSIVKREDKPTSSKPSA 289

Query: 279 LFDLTGLQKEVNKKLNLSAEETLKIAQSLYEKKFITYPRT-------------------- 318
            F  + LQ+  + +L    ++T+ +AQ LYE  +ITY RT                    
Sbjct: 290 PFITSTLQQAASNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSVDAVAMARTYIEEE 349

Query: 319 -GSKYIPEDMWTEIPNLIRALQDRDTCKQAVAKVKWGRFNKRIVNDLRVTDHHGLLTTDT 377
            G KY+PE      PN+  + +      +A+                R +D +   TT  
Sbjct: 350 FGKKYLPEK-----PNVYSSKEGAQEAHEAI----------------RPSDAN---TTPA 385

Query: 378 IPSALNAKENAVYDMIAFRLLEAISGACTKEATHITLQALHYDFTTKGCKVLEPGWRSIK 437
             S +      +Y++I  + L          +T +T+ A  ++   KG  +   G+  + 
Sbjct: 386 KLSGMERDAERLYELIWRQFLACQMLPAQYLSTTVTVAASDFELRAKGRILKFDGYTRVM 445

Query: 438 GNFT---DDDAEPIEDLPDIKEGDVLKIKQAAVLEKKTKPPVLYTEAGLLSAMETAGKDI 494
                  DDD      LPD+ +GD LK+      +  TKPP  Y+EA L+  ME      
Sbjct: 446 PQIAKPGDDDV-----LPDMAQGDTLKLITLDPSQHFTKPPARYSEASLVKEMEKR---- 496

Query: 495 KNEEERKALQNIGIGTPATRAAIIETLFTRNYIQREKKSLIPTEKGLQVYELVKD--RKI 552
                       GIG P+T AAII T+  R Y+    +     + G  V E + +    +
Sbjct: 497 ------------GIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTERLSESFSNL 544

Query: 553 ADVAMTAEWELALQKIETSE 572
            D   TA  E  L  +   E
Sbjct: 545 MDYGFTAGMEENLDDVAQGE 564