Pairwise Alignments

Query, 693 a.a., Topoisomerase IA from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 773 a.a., DNA topoisomerase I, bacterial from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  117 bits (292), Expect = 3e-30
 Identities = 141/540 (26%), Positives = 232/540 (42%), Gaps = 72/540 (13%)

Query: 4   VIAEKPSVAREIASLLGATEKKEGHLTGNGYFVTWAFGHLVGLGMPEDYGITGFDKAALP 63
           VI E P+ A+ I          EG+L G  Y VT ++GH+  L   +          A+ 
Sbjct: 6   VIVESPAKAKTI----------EGYL-GKDYKVTSSYGHVRDLPKGDK---------AID 45

Query: 64  ILPHPFLLAVRKVKKDKGYTTDAGAIKQLKIIEQLFNRSDGIIVATDAGREGELIFRYIY 123
           I  H       +V  DK        IKQLK   ++   SD I +A+D  REGE I  ++ 
Sbjct: 46  IKNH--FKPTYEVTSDK-----KEVIKQLK---KMVKDSDTIYLASDDDREGEAISWHLK 95

Query: 124 EYLKCIKP-FQRLWISSLTEKAIKQGFDNLKDGKEFDGLYQAAQGRSRADWLVGINATQA 182
           E LK      +R+    +T+ AI +  +N +   + D L  A Q R   D LVG   +  
Sbjct: 96  EVLKLDNDKTKRIVFREITKNAITKAIENPRS-IDID-LVNAQQARRILDRLVGFELSPV 153

Query: 183 LSIAAGNGVYSLGRVQTPTLALICRRYLENKNFSVQKYWQIQLSHTKEFIEFKSLSKNKW 242
           L      G+ S GRVQ+  +  I  R  E   F  +  +++      +  E  +    K+
Sbjct: 154 LWKKVKAGL-SAGRVQSVAVRFIVEREREIDKFESKSSYKVTAIFNVKGKELNAELPKKF 212

Query: 243 DNQKLAKDTLKS-IERNGNTAAVTSVETKNVTEQPPLLFDLTGLQKEVNKKLNLSAEETL 301
           + Q+ A+  LK+ +E +    ++ ++E K   + P   F  + LQ+E ++KL+ S  +T+
Sbjct: 213 ETQEEAEAFLKNCLEAD---FSIKNLEKKPAKKTPAAPFTTSTLQQEASRKLSFSVAQTM 269

Query: 302 KIAQSLYEKKFITYPRTGSKYIPEDMWTEIPNLIRALQDRDTCKQAVAKVKWGRFNKRIV 361
            +AQ LYE   ITY RT S  + ++      N I +    +  K      K         
Sbjct: 270 TLAQRLYEAGKITYMRTDSVNLSQEAMESAQNQIISAFGPEYHKSRKYTSK--------- 320

Query: 362 NDLRVTDHHGLLTTDTIPSALNAKEN--AVYDMIAFRLLEAISGACTKEATHITLQALHY 419
           ++     H  +  T+     ++ + N   +Y++I  R + +       E T +T+   + 
Sbjct: 321 SEGAQEAHEAIRPTNFANEEISGERNEQRLYELIWKRAIASQMADALLEKTLVTIGISNS 380

Query: 420 DFT--TKGCKVLEPGWRSIKGNFTDDDAEPIED-----LPDIKEGDVLKIKQAAVLEKKT 472
           D T    G  +   G+  +    TDD+ E   +     LP +  G  L + +    +  T
Sbjct: 381 DLTLSASGEVIKFEGFLKVYLESTDDEEEEENNDNKGLLPPLTIGQDLDLIEMKSRQSFT 440

Query: 473 KPPVLYTEAGLLSAMETAGKDIKNEEERKALQNIGIGTPATRAAIIETLFTRNYIQREKK 532
           +PP  YTEA L+                K L+ +GIG P+T A  I T+  RNY+ +E +
Sbjct: 441 RPPARYTEASLV----------------KKLEEMGIGRPSTYAPTISTIQKRNYVIKESR 484