Pairwise Alignments

Query, 652 a.a., DNA gyrase, B subunit from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 804 a.a., DNA gyrase subunit B (EC 5.99.1.3) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  601 bits (1549), Expect = e-176
 Identities = 313/571 (54%), Positives = 403/571 (70%), Gaps = 12/571 (2%)

Query: 12  YSAGNIQILEGLEAVRKRPAMYIGDVGV-KGLHHLIWEVVDNSIDEALAGHCDTIHVTVL 70
           Y + +I++L+GL+AVRKRP MYIGD     GLHH+++EVVDN+IDEALAGHC  I VT+ 
Sbjct: 5   YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVVTIH 64

Query: 71  EDNSVQVEDNGRGIPTDMHEKEKRSALEVVMTVLHAGGKFDKDTYKVSGGLHGVGVSCVN 130
            DNSV V D+GRGIPT +H +E  SA EV+MTVLHAGGKFD ++YKVSGGLHGVGVS VN
Sbjct: 65  ADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 124

Query: 131 ALSTHLKATVYRNGKVFEQEYSRGVPQTGVTEIGETEKRGTIIHFVPDGDIFT-VTEYKY 189
           ALS  L+  + R+GK+  Q Y  GVPQ  +   G+T+K GT++ F P  + FT VTE++Y
Sbjct: 125 ALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDTDKTGTMVRFWPSHETFTNVTEFEY 184

Query: 190 ETIANRLREMAFLNAGVRIFFKDMRELDEEGNPKSDEFFSEGGLIEFVEYLDETREKIIQ 249
           E +A RLRE++FLN+GV I  +D R+       K D F  EGG+  FVEYL++ +  I  
Sbjct: 185 EILAKRLRELSFLNSGVSIRLRDKRD------GKEDHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 250 EPIYIESEKNAVPVQVAMSYNSSFSENVVSYVNTINTYEGGTHVSGFRRALTRTLKGYAD 309
              Y  +EK+ + V+VA+ +N  F EN+  + N I   +GGTH++GFR A+TRTL  Y D
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 310 KSGMLDKVKFDVSGDDFREGLTAVISVKVAEPQFEGQTKTKLGNSEVVSAVDSAVSEVLQ 369
           K G   K K   +GDD REGL AV+SVKV +P+F  QTK KL +SEV SAV+  ++E+L 
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358

Query: 370 YWLEEHPKEAKIIVGKVVLAAQARHAARKAREMVQRKNVLGGGGLPGKLADCANTNPEVC 429
            +L E+P +AKI+VGK++ AA+AR AAR+AREM +RK  L   GLPGKLADC   +P + 
Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 430 ELYLVEGDSAGGSAKQGRDRDFQAILPLKGKILNVEKAHEHKIYDNDEIKNILTALGVKF 489
           ELYLVEGDSAGGSAKQGR+R  QAILPLKGKILNVEKA   K+  + E+  ++TALG   
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC-- 476

Query: 490 GTAEDEKELDLTNLRYHKIVIMTDADIDGSHIRTLILTLFFRYMRSLIENGYVYIALPPL 549
           G   DE   D   LRYH I+IMTDAD+DGSHIRTL+LT F+R M  ++E G+VYIA PPL
Sbjct: 477 GIGRDEYNPD--KLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPL 534

Query: 550 YLLKKGKDERYCWSEDERIKLTKEMAGDGKT 580
           Y +KKGK E+Y   ++   +    +A DG T
Sbjct: 535 YKVKKGKQEQYIKDDEAMDQYQISIALDGAT 565



 Score = 94.7 bits (234), Expect = 1e-23
 Identities = 47/70 (67%), Positives = 55/70 (78%), Gaps = 1/70 (1%)

Query: 583 VGIQRYKGLGEMNPEQLWTTTMDPESRTLKQVTIESAAEADHLFSMLMGDEVAPRREFIE 642
           + IQRYKGLGEMNP+QLW TTMDPESR + +VT++ A  AD LF+ LMGD V PRR FIE
Sbjct: 734 LAIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIE 793

Query: 643 KNA-KYAKID 651
           +NA K A ID
Sbjct: 794 ENALKAANID 803