Pairwise Alignments

Query, 350 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 293 a.a., RNA polymerase sigma-70 factor from Paraburkholderia sabiae LMG 24235

 Score =  148 bits (374), Expect = 2e-40
 Identities = 89/279 (31%), Positives = 152/279 (54%), Gaps = 12/279 (4%)

Query: 67  RFRPLLFTYAYNILGAAMEAEDVVQDVFEKFLTLDTNTIQNEKAYLIRMVINQAINRKKQ 126
           + RP L   AY +LG+  EAED+VQDV+ ++ + +   I N +A+L+ +    +I+R + 
Sbjct: 10  QLRPRLQKIAYRMLGSVAEAEDIVQDVWLRWHSAERAGIDNAEAWLVSVTTRMSIDRLRA 69

Query: 127 LNRSLLHYPNDWLPEPVITNMD------TERLEDEHILSYSMMLLLEQLEPGPRAVFLLK 180
                 HY   WLPEP +T+        TER +D   +S + ++LLE+L P  RA FLL+
Sbjct: 70  AKIQREHYTGIWLPEPEMTDSPATPEEMTERADD---VSVAFLMLLERLTPEARAAFLLR 126

Query: 181 ESFGYSHKAISQTLDISQETSRQQLSRAKKKLRNTTSPQVI--EPNREGVEAYLKAIKNA 238
           E F   +  ++  +  ++   RQ +SRAK +LR+      +  E +R+ ++++ +A++ A
Sbjct: 127 EVFDADYDEVANAIGKTEAACRQLVSRAKAQLRDERPRYAVPRETHRQLLQSFAQALERA 186

Query: 239 DAKALEELLLEDISLTSDGGGKVPAGTKLVQGTHRVVAMLQGLFRKFYQEINLLPTTVNH 298
           D  A+   L ED  L  DGGGKV +  K + G  R+  +     R++   +++   T+N 
Sbjct: 187 DFHAINAFLAEDAILIGDGGGKVTSFPKPMVGGRRIAQLFYAALRRYPGRVHVKLVTLNG 246

Query: 299 SPAILYLTPAGEVTNCQVFVFENRKIARIFFIRNPEKLL 337
            PA L     G++ + Q F  +  +I +I   RNP+KL+
Sbjct: 247 RPAFLRFI-EGQLESAQTFETDGERIVKIHVQRNPDKLM 284