Pairwise Alignments

Query, 482 a.a., Retron-type reverse transcriptase from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 431 a.a., Group II intron-encoded protein LtrA from Alteromonas macleodii MIT1002

 Score =  155 bits (391), Expect = 3e-42
 Identities = 114/365 (31%), Positives = 181/365 (49%), Gaps = 50/365 (13%)

Query: 78  GSAGIDGMSVEELRQWFSSHYHEFQSQIITGKYRVESVREVQIPKPNGGVRILGIPTVKD 137
           G+ GIDG +  +  Q   ++      ++ +G+YR  ++R V IPK +G +R LGIPT +D
Sbjct: 45  GAVGIDGETARDYEQHLDANLQSLLERVKSGRYRAPAIRRVYIPKGDGKLRPLGIPTFED 104

Query: 138 RLVQQAISQVLSLHYDPTFSDRSYGFRPDRGAHDALRQAGQEV-SEGRDWIVDIDLEKFF 196
           +LVQ+A+  +L   Y+ TF D S+GFRP   AH AL+     +  +G  W++D+D++++F
Sbjct: 105 KLVQRAVVMLLEPVYEQTFYDCSFGFRPGYSAHQALQSLRNHIMDDGGKWVLDVDIQQYF 164

Query: 197 DTVNHDRLMWLLGTRIGDKTLLKLIGKFLRAGMLKDGLVSQGVKGMPQGSPLSPLLSNI- 255
           DT+ H +L   L  R+ D  + K+I K+L+AG++    + + V G PQG  +SPLL+NI 
Sbjct: 165 DTIEHTQLRNFLDQRVTDGVIRKMIDKWLKAGVMDGSKLKKSVIGTPQGGVISPLLANIY 224

Query: 256 ---ILDE----LDKELEVRGHRFVRYADDLIVMVKSEPSAKRVLSSLT-AFIEQRMLLKV 307
              +LDE      K   +      R+ADD +++ +      RV   LT  F    + L  
Sbjct: 225 LHYVLDEWFANSVKPRMLGRSSLTRFADDFVMVFEHYEDCYRVQQVLTKRFTRYGLTLHP 284

Query: 308 NKS----------KSKISRPYELNF-------------LGHSILIEGRLGLSKTSEQRLK 344
           +K+          K+ + R   +NF              GH ++ +      KT++ RL 
Sbjct: 285 DKTRRVDFRFRYRKTNVQRGKCVNFDFLGFTHYWGRSRRGHFVVCQ------KTAKNRLA 338

Query: 345 AKLKQ---LTQRNRGISLEQLVKELNPILRGWLNYF---KNAQMIGRL-----KAIEGWL 393
             LK    L Q+ R   L+   + LN  L G   YF    N + + RL     +    WL
Sbjct: 339 RTLKAFNVLCQKMRHKPLDLQWEWLNRRLVGHYVYFGITGNGKSLKRLHHKVERLWHKWL 398

Query: 394 NRRIR 398
            RR R
Sbjct: 399 GRRSR 403