Pairwise Alignments

Query, 1428 a.a., DNA-directed DNA polymerase III (polc) from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

 Score =  689 bits (1778), Expect = 0.0
 Identities = 437/1212 (36%), Positives = 653/1212 (53%), Gaps = 92/1212 (7%)

Query: 245  FSHLHVHTQYSILQATSEIPAMVARAKEFNMPAIAMTDHGNMMAAFHFVKAAMDNDIKPV 304
            F HL +HT+YS++     I  +V      NMPA+A+TD  NM +   F K AM   IKP+
Sbjct: 5    FVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKPI 64

Query: 305  VGCEFNICRDHQNKSQKDDGFQAVLLAKNKTGYHNLAKLASFAYTQGFYYVPRI-DKELL 363
             G +  +     NK   +   +  LLA N  GY NL +L S  +  G      I ++E +
Sbjct: 65   CGADLWL----SNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWV 120

Query: 364  VQYKGDIIATTGGLWGEVPFLILNVGETQAEEAFVWWKEQFGEDFYVELNRHGIPEEEKV 423
             +    +I  +    GE+   +L     +AE     W + F + FY+E+ R   P +E+ 
Sbjct: 121  AEASEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPNDEEH 180

Query: 424  NEVLLRFAQKYDVKYFAANNTYYNTKNDAKAHDILLCVKDGEKVDKPKRYIGKKGREFRY 483
                +  A K      A N+  +  K D +AH+  +C+ +G  +D P+R      + +  
Sbjct: 181  LHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRR-----SKNY-- 233

Query: 484  GFPNEEFYIKTPEEMKKLFADLPEAIECTNEIIEKVEPYKLAREVLLPKFNIPEQFQDPQ 543
               +EE Y+K+ EEM +LF+DLPEA+E + EI ++        +  LP F IP       
Sbjct: 234  ---SEEQYLKSAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIP------- 283

Query: 544  DDEDGGKRGENAYLRHLTYEGAKRRY----PEITEEIRE--------RLDFELSIIANTG 591
               DG    E  Y R ++++G + R     P+ T E  E        RL+FEL II   G
Sbjct: 284  ---DGMTIDE--YFRKVSFDGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMG 338

Query: 592  YPGYFLIVQDFTTAAREMGVSVGPGRGSAAGSAVAYCIGITNVDPVAYDLLFERFLNPDR 651
            +PGYFLIV DF   A+  GV VGPGRGS AGS VAY   IT++DP+ YDLLFERFLNP+R
Sbjct: 339  FPGYFLIVMDFIQWAKNNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPER 398

Query: 652  VSLPDIDIDFDDHGRQKVIDYVIEKYGANQVAQIITYGTMAAKSAIRDTARALDLPLSDA 711
            VS+PD D+DF   GR +VI+YV EKYG N V+QIIT+G+MAAK+ IRD AR        A
Sbjct: 399  VSMPDFDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLA 458

Query: 712  DRLAKLVPDIKLKALFGLANDRGKLAEKLKNNSENIDKAYE----LINISKGNDDLSKTI 767
            DRL+K++P                           ++KAYE    L +  K +++ ++  
Sbjct: 459  DRLSKMIP---------------------FEVGMTLEKAYEQEEILRDFIKIDEEAAEIW 497

Query: 768  NQAKILEGSVRNTGIHACGVIITPDDITNFVPVALAKDSDMYCTQFDNSVVENAGLLKMD 827
            + A+ LEG VRN G HA GV+I P  +T+F P+   ++     TQFD   VE AGL+K D
Sbjct: 498  DMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGGGLVTQFDKDDVEAAGLVKFD 557

Query: 828  FLGLKTLTLIKDAVRIV-KERHGIELDPEN---FPIDDKETYELFQRGETVGIFQYESPG 883
            FLGL+TLT+I  A++ + ++R  +  +P +    P+DDK TY L Q+ ET  +FQ ES G
Sbjct: 558  FLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDKPTYTLLQKAETTAVFQLESRG 617

Query: 884  MQKYMRELKPTVFADLIAMNALYRPGPLE--YIPSFIKRKHGLEPIAYDLDD-----MEE 936
            M++ +++LKP    DLIA+ AL+RPGPL+   +  FI RKHG   +AY   D     ++ 
Sbjct: 618  MKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAELAYPHSDYQYEGLKP 677

Query: 937  YLQETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKLRDVLDKMKPKFVNQAAEKG 996
             L  TYGI +YQEQVM ++Q +AG+T G AD+LR+AMGKK  + + K +  F+   A   
Sbjct: 678  VLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPEEMAKQRGGFIEGCATNN 737

Query: 997  HDKAKLEKIWKDWEAFASYAFNKSHSTCYAWVAYQTAYLKAHYPAEYMASVLSNNMNDIT 1056
             D      I+   E FA Y FNKSHS  Y  V+YQTA+LKAHYPA +MA+VLS +M++  
Sbjct: 738  IDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHYPAPFMAAVLSADMHNTD 797

Query: 1057 QVTFFMEECKRMGIEVLGPDVNESKDGFTVNQEGQIRFGLAAIKGAGGAAVHSVIEERAE 1116
            +V   +EE + M + +  PDVN S+  FTVN EG+I +GL AIKG G   V ++ E R +
Sbjct: 798  KVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIYGLGAIKGVGEGPVEAITEAR-Q 856

Query: 1117 NGPYKSIFDFTQRVNLRSVNKKTLESLAMAGGFD----CFPDHHRRQYLEAPENDATLI- 1171
            +GP+K +FDF  RV+L+ +NK+TL+ L  +G  D     F D  +        N A L+ 
Sbjct: 857  DGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFHDEPKAYQANIDRNRAVLLT 916

Query: 1172 --EKAVKYAQKKAQEAESSQVSLFGGGSGMEVP--MPSITPIEPFSQLQQLNIEKEVVGL 1227
              E+A+K A++ A+  +S    LFGG    E      +    +  +  ++L  EK+ +GL
Sbjct: 917  AMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYGNHRKAKELTLKERLKGEKDTLGL 976

Query: 1228 YISGHPLDQFKVEFDSFTNTPLSEFANTEALKTKGEIKAAGVVTSFAHRTTKNGNPFGTL 1287
            Y++GHP+D+++ E   F    + +       +T      AG++ +      K G+  G +
Sbjct: 977  YLTGHPIDEYEGEIRRFARQRIIDLKPARDTQT-----VAGMIIALRVMKNKKGDKMGFI 1031

Query: 1288 TLEDYNGGHTFFLFGEDYIKYKEYFMTGWFLYVTGSVQGKRWNPDELEFKVGNIMLLNEV 1347
            TL+D +G     LF + +   +    T   + V G V    ++   L  ++  +M + + 
Sbjct: 1032 TLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFS-GGLRLRIKRVMSMEDA 1090

Query: 1348 RGKMVKGLRLNISLDDLTLDLMERLEAITSKYKGEAKLYINVTDVKERIAVDLRSTKFLI 1407
            R  + + LRL +  + L  D +  L  +  +++G   + +  T    +  +    T + I
Sbjct: 1091 RTNLAESLRLKVKTEALKGDQLRWLGELLKRHRGACPVTMEYTGSDAKAMLQFGET-WRI 1149

Query: 1408 DPSQDMIKALED 1419
            DP+  +I+AL D
Sbjct: 1150 DPADGLIQALRD 1161