Pairwise Alignments

Query, 1428 a.a., DNA-directed DNA polymerase III (polc) from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 1174 a.a., DNA polymerase III, alpha subunit from Pseudomonas putida KT2440

 Score =  706 bits (1823), Expect = 0.0
 Identities = 434/1217 (35%), Positives = 655/1217 (53%), Gaps = 93/1217 (7%)

Query: 241  VDTPFSHLHVHTQYSILQATSEIPAMVARAKEFNMPAIAMTDHGNMMAAFHFVKAAMDND 300
            +  PF HL VH+++S++     I  +       NMPA+A+TD  NM +   F K AM   
Sbjct: 1    MSVPFVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAG 60

Query: 301  IKPVVGCEFNICRDHQNKSQKDDGFQAVLLAKNKTGYHNLAKLASFAYTQGFYY-VPRID 359
            IKP+ G +  +              +   LA +  GY NL +L S  +T G    +  + 
Sbjct: 61   IKPICGADLWLAGADPEAPLS----RICFLAMDPKGYRNLTELISRGWTDGQRNGLVILQ 116

Query: 360  KELLVQYKGDIIATTGGLWGEVPFLILNVGETQAEEAFVWWKEQFGEDFYVELNRHGIPE 419
            +E +      +IA + G  G++   +L   + +AE     W   F E FYVE+ R     
Sbjct: 117  REWIAPASEGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMGMFPERFYVEVQRTNRAR 176

Query: 420  EEKVNEVLLRFAQKYDVKYFAANNTYYNTKNDAKAHDILLCVKDGEKVDKPKRYIGKKGR 479
            +E+     +  A K      A N+  +  + D  AH+  +C+ +G  +D P+R      R
Sbjct: 177  DEEYVHAAVALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRR-----PR 231

Query: 480  EFRYGFPNEEFYIKTPEEMKKLFADLPEAIECTNEIIEKVEPYKLAREVLLPKFNIPEQF 539
             +     +++ Y+K+ EEM +LF+DLP+AI  T EI ++        +  LP F  P   
Sbjct: 232  CY-----SDQQYLKSAEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGM 286

Query: 540  QDPQDDEDGGKRGENAYLRHLTYEGAKRR------------YPEITEEIRERLDFELSII 587
                        G + YLRH+ +EG + R            Y E  +   +RL FEL II
Sbjct: 287  ------------GIDDYLRHVAHEGLEERLAVLWPKETTPNYEEKRQVYLDRLKFELDII 334

Query: 588  ANTGYPGYFLIVQDFTTAAREMGVSVGPGRGSAAGSAVAYCIGITNVDPVAYDLLFERFL 647
               G+PGYFLIV DF   A+   V VGPGRGS AGS VAY + IT++DP+AYDLLFERFL
Sbjct: 335  IQMGFPGYFLIVMDFIKWAKNNDVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFL 394

Query: 648  NPDRVSLPDIDIDFDDHGRQKVIDYVIEKYGANQVAQIITYGTMAAKSAIRDTARALDLP 707
            NP+RVS+PD D+DF   GR +VIDYV E YG N V+QIIT+GTMAAK+ +RD AR     
Sbjct: 395  NPERVSMPDFDVDFCMDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKS 454

Query: 708  LSDADRLAKLVPDIKLKALFGLANDRGKLAEKLKNNSENIDKAYE----LINISKGNDDL 763
               ADRL+K++P                           ++KAYE    L +  KG++D 
Sbjct: 455  YGLADRLSKMIPF---------------------EVGMTLEKAYEQEEILRDFLKGDEDA 493

Query: 764  SKTINQAKILEGSVRNTGIHACGVIITPDDITNFVPVALAKDSDMYCTQFDNSVVENAGL 823
             +  + A  LEG  R TG HA GV+I P  +T+F P+A  ++     TQFD   VE AGL
Sbjct: 494  REIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLVTQFDKDDVEAAGL 553

Query: 824  LKMDFLGLKTLTLIKDAVRIVKERHGI----ELDPENFPIDDKETYELFQRGETVGIFQY 879
            +K DFLGL+TLT+IK A+ I+          +L+ +  P+DD++TYEL Q+ ET  +FQ 
Sbjct: 554  VKFDFLGLRTLTIIKWAMEIINREQAKKNLPDLNIDFIPLDDRKTYELLQKAETTAVFQL 613

Query: 880  ESPGMQKYMRELKPTVFADLIAMNALYRPGPLE--YIPSFIKRKHGLEPIAYDLDD---- 933
            ES GM++ +++LKP    DLIA+ AL+RPGPL+   +  FI RKHG   +AY   D    
Sbjct: 614  ESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAELAYPHSDYQYE 673

Query: 934  -MEEYLQETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKLRDVLDKMKPKFVNQA 992
             ++  L  TYGI +YQEQVM ++Q +AG+T G AD+LR+AMGKK  + + K +  F+   
Sbjct: 674  GLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPEEMAKQRGGFIEGC 733

Query: 993  AEKGHDKAKLEKIWKDWEAFASYAFNKSHSTCYAWVAYQTAYLKAHYPAEYMASVLSNNM 1052
                 D      I+   E FA Y FNKSHS  Y  V+YQTA+LK HYPA +MA+VLS +M
Sbjct: 734  VANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHYPAPFMAAVLSADM 793

Query: 1053 NDITQVTFFMEECKRMGIEVLGPDVNESKDGFTVNQEGQIRFGLAAIKGAGGAAVHSVIE 1112
            ++  +V   +EE + M + +  PDVN S   FTVN +G+I +GL AIKG G   V +++E
Sbjct: 794  HNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTVNNDGRIVYGLGAIKGVGEGPVEAIVE 853

Query: 1113 ERAENGPYKSIFDFTQRVNLRSVNKKTLESLAMAGGFD----CFPDHHRRQYLEAPENDA 1168
             RA+ GP+K +FDF +R++L+ VNK+TL++L  +G  D     F D  +  +     N A
Sbjct: 854  ARAQGGPFKDLFDFCERIDLKRVNKRTLDALVRSGALDRLGPHFHDEIKAYHANIDINRA 913

Query: 1169 TLIE---KAVKYAQKKAQEAESSQVSLFGG---GSGMEVPMPSITPIEPFSQLQQLNIEK 1222
            TL+    +A+K A++ A  A+S  V LFG     + ++V   +   +   +  ++L  EK
Sbjct: 914  TLLSALGEAIKAAEQAAHTADSGHVDLFGSMFDAADVDV-YANHRKVRELTLKERLKGEK 972

Query: 1223 EVVGLYISGHPLDQFKVEFDSFTNTPLSEFANTEALKTKGEIKAAGVVTSFAHRTTKNGN 1282
            + +GLY++GHP+D+++ E   F    + +   +   +T      AG++ +      K G+
Sbjct: 973  DTLGLYLTGHPIDEYETEIRRFARQRIVDLKPSRETQT-----IAGMIIALRVMKNKKGD 1027

Query: 1283 PFGTLTLEDYNGGHTFFLFGEDYIKYKEYFMTGWFLYVTGSVQGKRWNPDELEFKVGNIM 1342
              G +TL+D +G     LF + ++  +    T   + V G V    ++   L  +V  +M
Sbjct: 1028 KMGFVTLDDRSGRIEASLFADAFMAAQSLLQTDAMVVVEGEVSNDDFS-GGLRLRVKQVM 1086

Query: 1343 LLNEVRGKMVKGLRLNISLDDLTLDLMERLEAITSKYKGEAKLYINVTDVKERIAVDLRS 1402
             + + R K+ + LRL ++ D L  D ++ L  + ++++G   + +  T    +  +    
Sbjct: 1087 TMEDARTKLAESLRLKVAHDALKGDRLKWLGELITRHRGACPITLEYTGSDAKAMLQF-G 1145

Query: 1403 TKFLIDPSQDMIKALED 1419
             ++ IDP+  +I+AL D
Sbjct: 1146 EQWAIDPADGLIQALRD 1162