Pairwise Alignments

Query, 503 a.a., RND family efflux transporter, MFP subunit from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 384 a.a., antibiotic transporter from Pseudomonas simiae WCS417

 Score = 67.0 bits (162), Expect = 1e-15
 Identities = 80/329 (24%), Positives = 135/329 (41%), Gaps = 40/329 (12%)

Query: 190 IPTSGIWKVAPSDYQTLVAPATGRVSFS---------SGVLT-----EGSPVKEGQVLMT 235
           IP  G+  + P  + TL +   GR +           +G++      EG  VKEGQ L  
Sbjct: 34  IPQVGVVTIQPQAF-TLTSELPGRTTAYRIAEVRPQVNGIILKRLFKEGGDVKEGQQLYQ 92

Query: 236 VSSTGLTSNNLGAEIQKARADYEQAKSEYERKKELYESKIVPKSEFEQVEQKYQIAKTNY 295
           +  +        A ++ A+A   Q+KS  +R K+L + + V + E++        ++ N 
Sbjct: 93  IDPSVYE-----ATLKSAQASLTQSKSISDRYKQLVDEQAVSRQEYDTAVANRMTSEANV 147

Query: 296 ET--LSSGYSGGGKQVTAPIGGFIKSIQAVNGGFANQGDALVTVTSHKSSLLEVQVSPKY 353
           +T  ++  Y+    +V API G I       G   + G A       +   + V V+   
Sbjct: 148 QTAQINVRYT----KVFAPISGRIGRSSVTEGALVSNGQADAMAVIQQLDPIYVDVTQSS 203

Query: 354 SAELKNIRNIWYQPKEGAWSN-----LNEKGGKILSVD-----KEVEANQPLISVFAEV- 402
           +  LK  R++     E A  N     L  + G    VD      EV  +Q   SV     
Sbjct: 204 AEMLKLRRDLASGQLEKAGDNAAKVKLTLEDGSAYGVDGKLEFSEVSVDQTTGSVTLRAV 263

Query: 403 --NEGVEMPEGSFTEAQLAVGSAMESLVIPVSCLMEDY-GNYSVIVQLSGESFERRNVTL 459
             N    +  G F  AQL  G   ++++ P   +  D  G  + +V  +    E+R +  
Sbjct: 264 FPNPDHTLLPGMFVHAQLQAGVNSKAILAPQQGVTRDLKGTPTALVVNADNKVEQRELVA 323

Query: 460 GKRNGSEVEIIKGLSFGEVVVTKGAYQVK 488
            +  G+   + KGL+ G+ V+T+G   VK
Sbjct: 324 NRTYGAYWLVEKGLNAGDRVITEGLQYVK 352