Pairwise Alignments

Query, 1116 a.a., transcription-repair coupling factor (mfd) from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 1123 a.a., transcription-repair coupling factor from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 1412 bits (3656), Expect = 0.0
 Identities = 689/1110 (62%), Positives = 878/1110 (79%), Gaps = 1/1110 (0%)

Query: 1    MEKHAFLTLYEQDSYIKTVAKTIQSSVGSNFAFKGISGSMDMVLLATFINLRHSSHLIIA 60
            M+   FL LY  DS ++T+A+ ++++       KG++GS D VL +    L +   L + 
Sbjct: 1    MKVKDFLELYRLDSVVQTLAQRLKATEPYRLQIKGLAGSQDAVLASAVYTLNYGHQLFVM 60

Query: 61   HDKEEAAYLASDLSSLL-DRVTPHIFPSSYKRPYQHEEVDNANVLMRAEILNKVLSSDTK 119
            HDKEEAAY  +DL +LL +     +FP+SYKRPY  ++ +NAN+LMRAE+LN++     K
Sbjct: 61   HDKEEAAYFYTDLKNLLGEEKEILLFPTSYKRPYSFDDTENANILMRAEVLNRLNQKTGK 120

Query: 120  MEIIVSYPEALYEKVINKKSLQENTFTAKVGEKVDVEFITELLSTYDFEKTDFVYEPGQF 179
             E+IV+YPEAL EKVINKKSL ENT  AK+GEK+D  F++E+L+ Y FE+T+FVYE GQ+
Sbjct: 121  GELIVTYPEALTEKVINKKSLVENTLGAKIGEKLDTTFLSEMLAEYGFERTEFVYEAGQY 180

Query: 180  AIRGGIIDVFSFANEYPYRIELFGKEIESIRTFDTESQLSEESLDHISIIPNVQTKLMQE 239
            A+RGGI+DV+S+AN+ PYRIELFG EIESIRTFD ++QLS E+   ISIIPNVQTKL+QE
Sbjct: 181  AVRGGIVDVYSYANDLPYRIELFGDEIESIRTFDPDTQLSVETKKAISIIPNVQTKLLQE 240

Query: 240  VRQSFTDFLPKDTCVWIKDVQFTMDMLDNAFEKARQQFDKIVDQTGSKQLVLQPENLFDD 299
             R++F DFLP +T +W KDV+ T+D++D  F+KA   F+K++  +G  Q+V  PE LF  
Sbjct: 241  TREAFLDFLPNNTTLWFKDVRLTLDVIDEYFDKASHNFEKMMATSGGTQIVSDPEQLFQT 300

Query: 300  GAAFLSSLDRLTKIEFGNQYHLPTSKVFDFDIKPQPSFNKNFDLLVENLVDNERKGLLNI 359
               F   L++ T +E G ++H   ++V     KPQPSFNK+F  LV++L + +  G +N+
Sbjct: 301  QKQFKKLLEKYTVVEIGKRFHFKNTEVMQLQAKPQPSFNKDFKRLVKDLHEQQGAGFVNV 360

Query: 360  ICSESEKQVERLQNIFQELDPTLKIQSLPVSIREGFVDHSTMIACYTDHQIFERYHRYKS 419
            I ++S +Q+ RL  IF ELD  ++ Q LPVS+REGF+D +  I CYTDHQ+F+R++++K+
Sbjct: 361  IATDSPRQINRLTMIFDELDHDVRFQHLPVSLREGFIDQTLKITCYTDHQLFDRFYQHKA 420

Query: 420  HKKASKTKALTLKELKTLQAGDYVVHVDYGVGRFAGLEKVEVNDNFQEAVRLIFRDDDLL 479
                SK+KA+TLKEL++LQ GDYV H DYG+GRFAGLEKVEV    QEA+RL++RDDDLL
Sbjct: 421  KTGHSKSKAMTLKELRSLQPGDYVTHTDYGIGRFAGLEKVEVGGRLQEAIRLVYRDDDLL 480

Query: 480  YVNIHSLHKISKYSGQEGTLPTMSKLGSPEWENKKKKVKRKVKDIAKDLIALYAKRRNAS 539
            YV+IH+LHKISKYSG+EG  P+MSKLGSPEWENKKKKVK KVKDIA +LI+LYAKR+ A 
Sbjct: 481  YVSIHALHKISKYSGKEGGPPSMSKLGSPEWENKKKKVKSKVKDIAHELISLYAKRKAAP 540

Query: 540  GHQYAPDSVLQVELESSFIFEDTPDQAVATGDVKADMEKPYPMDRLVCGDVGFGKTEVAI 599
            G+ Y  D  LQ ELESSFI+EDTPDQ  AT DVKADME+P+PMDRLVCGDVGFGKTE+AI
Sbjct: 541  GYAYTRDGFLQAELESSFIYEDTPDQGKATEDVKADMEQPHPMDRLVCGDVGFGKTEIAI 600

Query: 600  RAAFKAINDRKQVAVLVPTTILAMQHYRTFKERLEGFPVKVDYINRFRTTKQVKEITKQV 659
            RAAFKA  D KQVA+LVPTTILAMQHYRTF++RLE FPV VDY+NRF+T K  K+  K+V
Sbjct: 601  RAAFKAACDGKQVAILVPTTILAMQHYRTFRDRLEQFPVTVDYVNRFKTAKDTKDTLKRV 660

Query: 660  TSGEIDILVGTHRIVNKDVQFKDLGLLIIDEEQKFGVKVKDQLKELRVNVDVLTLTATPI 719
              G++DIL+GTHRIV+KDV+FKDLGL+IIDEEQKFGVK K++LKE+++NVD LTLTATPI
Sbjct: 661  AEGKVDILIGTHRIVSKDVKFKDLGLMIIDEEQKFGVKTKEKLKEMKINVDTLTLTATPI 720

Query: 720  PRTLHFSLMGARDLSVIATPPPNRQPVTTEIHTFEEEVIRDAVSRELQRGGQVFFVHNRV 779
            PRTLHFSLMGARDLSVIATPPPNRQPV TE+H F+E +IRDA+  E++RGGQVFFVHNR+
Sbjct: 721  PRTLHFSLMGARDLSVIATPPPNRQPVKTELHVFDEALIRDAIVYEMKRGGQVFFVHNRI 780

Query: 780  GEIDSIANLIMRLVPDAKIAGAHGQMDGKQLEKIMVKFIEGEFDVLVSTNIIESGLDIPN 839
             +I+ IA +I+R VPD K+  AHGQM+ ++LEK M+KF+ GE+DVLVSTNIIESGLDI N
Sbjct: 781  KDIEEIAAMILRHVPDCKVTYAHGQMEPEKLEKRMMKFVNGEYDVLVSTNIIESGLDIEN 840

Query: 840  ANTIIINRAHMFGLSDLHQMRGRVGRSNKKAYCYLLTSPMSGLTAEARKRLQTLEEFSDL 899
            ANTIIINRAHMFGLSDLHQMRGRVGRSNKKAYCYLLT P++GL ++ARKRL TLEEFSDL
Sbjct: 841  ANTIIINRAHMFGLSDLHQMRGRVGRSNKKAYCYLLTPPVAGLPSDARKRLSTLEEFSDL 900

Query: 900  GDGFKVAMRDLDIRGAGNLLGAEQSGFITDLGFEMYHKILDEAVQELKENEFASLFEVDL 959
            G+GFK+AMRDLDIRGAGNLLG EQSGFITDLGFEMYH++LD+A++ELKE EF  LF  D 
Sbjct: 901  GEGFKIAMRDLDIRGAGNLLGGEQSGFITDLGFEMYHQVLDDAIKELKETEFRDLFLNDN 960

Query: 960  KEKVKVLVQDCVIETDMELLIPEDYVSNISERLNLYSKLDNIKTEEALTKFAHAVSDRFG 1019
              +    V++C IETDME+LIP+ YVSNISERLNLYSKLD+ K  + L K   ++ DRFG
Sbjct: 961  LAEFIEPVRECNIETDMEVLIPDWYVSNISERLNLYSKLDSTKDLQELEKLRESIVDRFG 1020

Query: 1020 PIPPVVEDLMETVRLRWLAEGLGFEKLVLKSGQMKCYFVPSTRESYFKSDIFGNIIRFIQ 1079
            P+P  V+ L+E V+LRW A+ LGFEKL +K   MK Y      + YF+SD+FGNI++++Q
Sbjct: 1021 PLPEAVQQLVEIVKLRWQAQQLGFEKLTIKKEVMKGYLPSENNDKYFQSDVFGNILKYVQ 1080

Query: 1080 GHGKFCKIKEHKNRLILTIGGIKSVEKAKQ 1109
             H +  ++KE K++LI+ +  I+S+  AK+
Sbjct: 1081 QHPRKSRLKEAKHKLIVIVEDIQSIADAKE 1110