Pairwise Alignments

Query, 1116 a.a., transcription-repair coupling factor (mfd) from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 1159 a.a., transcription-repair coupling factor from Serratia liquefaciens MT49

 Score =  541 bits (1393), Expect = e-157
 Identities = 288/713 (40%), Positives = 447/713 (62%), Gaps = 14/713 (1%)

Query: 337  FNKNFDLLVENLVDNE-RKGLLNIICSESEKQVERLQNIFQELDPTLKIQSLPVSIREGF 395
            F ++FD  +   V++E R+  L  +    +     +Q++ Q  +P  +   +  S R GF
Sbjct: 387  FTESFDGSIIFSVESEGRRETLQDLLGRIKLSTALIQHLDQA-EPAGRYMMVGASER-GF 444

Query: 396  VD--HSTMIACYTDHQIFERYHRYKSHKKASKTKALTLKELKTLQAGDYVVHVDYGVGRF 453
            +D   +  + C +D  + ER  R +   + +    + ++ L  L  G  VVH+++GVGR+
Sbjct: 445  LDGMRNRALICESD-LLGERVSRRRQDNRRTINTDVLIRNLAELHPGQPVVHLEHGVGRY 503

Query: 454  AGLEKVEVNDNFQEAVRLIFRDDDLLYVNIHSLHKISKYSGQEGTLPTMSKLGSPEWENK 513
             GL  +E      E + L +  +D LYV + SLH IS+Y+G       + KLG   W   
Sbjct: 504  VGLTTLEAGGIKAEYLILAYAGEDKLYVPVSSLHLISRYAGGADENAPLHKLGGDAWTRA 563

Query: 514  KKKVKRKVKDIAKDLIALYAKRRNASGHQYAPDSVLQVELESSFIFEDTPDQAVATGDVK 573
            ++K   +V+D+A +L+ +YA+R   +G  +  +         SF FE TPDQ  A   V 
Sbjct: 564  RQKAAERVRDVAAELLDIYAQRAAKTGFAFKHNREQYQLFCQSFPFETTPDQEQAINAVL 623

Query: 574  ADMEKPYPMDRLVCGDVGFGKTEVAIRAAFKAINDRKQVAVLVPTTILAMQHYRTFKERL 633
            +DM +P  MDRLVCGDVGFGKTEVA+RAAF A+ + KQVAVLVPTT+LA QH+  F++R 
Sbjct: 624  SDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENGKQVAVLVPTTLLAQQHFDNFRDRF 683

Query: 634  EGFPVKVDYINRFRTTKQVKEITKQVTSGEIDILVGTHRIVNKDVQFKDLGLLIIDEEQK 693
              +P++++ ++RFR+ K+ +++      G++DI++GTH+++  D+++KDLGLLI+DEE +
Sbjct: 684  ATWPIRIEMMSRFRSAKEQQQVMDDAVDGKVDIIIGTHKLLQSDLRWKDLGLLIVDEEHR 743

Query: 694  FGVKVKDQLKELRVNVDVLTLTATPIPRTLHFSLMGARDLSVIATPPPNRQPVTTEIHTF 753
            FGV+ K+++K +R +VD+LTLTATPIPRTL+ ++ G RDLS+IATPP  R  V T +  +
Sbjct: 744  FGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREY 803

Query: 754  EEEVIRDAVSRELQRGGQVFFVHNRVGEIDSIANLIMRLVPDAKIAGAHGQMDGKQLEKI 813
            +  V+R+A+ RE+ RGGQV++++N V  I+  A  +  LVP+A+IA  HGQM  + LE++
Sbjct: 804  DSLVVREAILREVLRGGQVYYLYNDVENIEKAAEKLAELVPEARIAIGHGQMRERDLERV 863

Query: 814  MVKFIEGEFDVLVSTNIIESGLDIPNANTIIINRAHMFGLSDLHQMRGRVGRSNKKAYCY 873
            M  F    F+VLV T IIE+G+DIP+ANTIII RA  FGL+ LHQ+RGRVGRS+ +AY Y
Sbjct: 864  MNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADRFGLAQLHQLRGRVGRSHHQAYAY 923

Query: 874  LLTSPMSGLTAEARKRLQTLEEFSDLGDGFKVAMRDLDIRGAGNLLGAEQSGFITDLGFE 933
            LLT     ++ +A KRL+ +    DLG GF +A  DL+IRGAG LLG +QSG +T +GF 
Sbjct: 924  LLTPNPKAMSTDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSGQMTTVGFS 983

Query: 934  MYHKILDEAVQELKENEFASLFEVDLKEKVKVLVQDCVIETDMELLIPEDYVSNISERLN 993
            +Y ++L+ AV  LK     SL ++   +          +E  M  L+P+DY+ +++ RL+
Sbjct: 984  LYMELLESAVDALKHGREPSLEDLTSNQ--------TEVELRMPALLPDDYIPDVNTRLS 1035

Query: 994  LYSKLDNIKTEEALTKFAHAVSDRFGPIPPVVEDLMETVRLRWLAEGLGFEKL 1046
             Y ++ + K +  L +    + DRFG +P    +L+++  LR  A+ LG +++
Sbjct: 1036 FYKRIASAKNDAELEELKVELIDRFGLLPDAARNLLQSAALRQHAQKLGIKRI 1088



 Score = 77.4 bits (189), Expect = 6e-18
 Identities = 52/201 (25%), Positives = 98/201 (48%), Gaps = 15/201 (7%)

Query: 36  ISGSMDMVLLATFINLRHSSHLIIAHDKEEAAYLASDLSSLLDRVTPHIFPSSYKR-PYQ 94
           ++GS   V  A  +   +   ++IA D + A  L  ++    D++   +  S ++  PY 
Sbjct: 32  LTGSACAVECAEIVERHNGPVMLIAPDMQNALRLRDEIQQFTDQMVTTL--SDWETLPYD 89

Query: 95  ----HEEVDNANVLMRAEILNKVLSSDTKMEIIVSYP-EALYEKVINKKSLQENTFTAKV 149
               H+E+ +A        L+ +    T    ++  P   L ++V   K L  +    K 
Sbjct: 90  SFSPHQEIISAR-------LSSLYHLPTMARGVIILPVNTLMQRVCPHKFLHGHALVMKK 142

Query: 150 GEKVDVEFITELLSTYDFEKTDFVYEPGQFAIRGGIIDVFSFANEYPYRIELFGKEIESI 209
           G+++  + +   L    +   D V E G+FA RG ++D+F   +E PYRI+ F  EI+S+
Sbjct: 143 GQRLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLFPMGSEEPYRIDFFDDEIDSL 202

Query: 210 RTFDTESQLSEESLDHISIIP 230
           RTFD ++Q +   ++ I+++P
Sbjct: 203 RTFDVDNQRTLNEVEAINLLP 223