Pairwise Alignments

Query, 593 a.a., transcription termination factor Rho from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 418 a.a., Transcription termination factor Rho from Sphingobium sp. HT1-2

 Score =  474 bits (1220), Expect = e-138
 Identities = 231/369 (62%), Positives = 300/369 (81%), Gaps = 3/369 (0%)

Query: 227 IENEGVLEIMSDGYGFLRSLDYNYLASPDDIYVSPSQIKLFGLKTGDNIKGQIRPPKEGE 286
           I  EG +E++ DG+GFLRS + N+LA PDDIYVSP+Q++ FGL+TGD ++G+IR PK+GE
Sbjct: 49  IMGEGTIEVLPDGFGFLRSPEANFLAGPDDIYVSPNQVRRFGLRTGDTVEGEIRAPKDGE 108

Query: 287 KYFALLKVASVNGKTTEEIRDRIPFEYLTPLFPEERLNLTTRADNF---STRIVDLFAPI 343
           +YFAL K+ SVN    + +R R+ F+ LTPL+PE++L L T        S R++D+ +P 
Sbjct: 109 RYFALTKLLSVNFDDPDVVRHRVNFDNLTPLYPEQKLRLDTLDPTIKDKSARVIDIVSPQ 168

Query: 344 GKGQRGMIVAQPKTGKTVLLQKIANAIAENHPECHLMILLIDERPEEVTDMARSVKAEVV 403
           GKGQR +IVA P+ GKTV+LQ IA AI +NHPE  L++LLIDERPEEVTDM RSVK EVV
Sbjct: 169 GKGQRTLIVAPPRVGKTVMLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVKGEVV 228

Query: 404 SSTFDEQAERHVKVSSMVLEKAKRMVECGHDVVILLDSITRLARAYNTVVPSSGKILSGG 463
           SSTFDE A RHV+V+ MV+EKAKR+VE   DVVILLDSITRL RAYNTVVPSSGK+L+GG
Sbjct: 229 SSTFDEPATRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVLTGG 288

Query: 464 VDANALHKPKRFFGAARNVENGGSLTIIATALVETGSKMDEVIFEEFKGTGNMELSLDRK 523
           VDANAL +PKRFFGAARN+E GGSL+IIATAL++TGS+MDEVIFEEFKGTGN E+ LDRK
Sbjct: 289 VDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 348

Query: 524 LSNRRIYPAIDVPGSGTRREDLLMEKEEMQRVWILRKLMSDMTSQEAMEFLLQRMKGTRD 583
           ++++RI+PA+DV  SGTR+E+LL+EK  + ++W+LR+++  M + +AMEFLL +MK ++ 
Sbjct: 349 VADKRIFPALDVGKSGTRKEELLVEKPTLSKMWVLRRILMQMGTVDAMEFLLDKMKDSKT 408

Query: 584 NAEFLISMN 592
           N +F  +MN
Sbjct: 409 NEDFFATMN 417



 Score = 36.6 bits (83), Expect = 2e-06
 Identities = 17/42 (40%), Positives = 31/42 (73%)

Query: 3  NIEELKIRLLSELKEIAEELGVKNFKSLKKDDLIYAILDQQA 44
          ++++LK  + ++L  +AEELGV+   +L+K DL++AIL  +A
Sbjct: 2  HLKDLKKTVPADLVTMAEELGVEGASTLRKQDLMFAILKAEA 43