Pairwise Alignments

Query, 360 a.a., RND family efflux transporter, MFP subunit from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 365 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

 Score =  126 bits (317), Expect = 8e-34
 Identities = 88/323 (27%), Positives = 154/323 (47%), Gaps = 9/323 (2%)

Query: 41  STPEAMTALPVDVVEVTPE---RLENNLNVTGNVLSNESVSLRAEITGLVESINFEEGQF 97
           S P A    P   V +      +L      +G + +   V + AE+ G +  I FE GQ 
Sbjct: 28  SAPPAAAVWPATKVALATAEQVQLARQRFASGELEAVNQVQVAAEMPGRITRIAFESGQT 87

Query: 98  VKKGTPLVYLNDDELTAQLDRLEYTKKLYEGQESRQKQLLAREAISQEEYDIILNQYNTT 157
           V  G  LV LND    A   +L+   +  +    R ++L A  A+SQE  D      +  
Sbjct: 88  VAAGQLLVQLNDAPEQALRVQLQARLRNADVVLQRSRKLRAMNAVSQELLDNAATAVDVA 147

Query: 158 LSDIKLVKAQLDKTVIKAPFDGVLGLRQISAGSVISTTDIIANIVNIDPIKIEFSIPERY 217
             +++ V+A + +  I+APF G LG+R++  G  ++  + I ++ +I  + + F++ E+ 
Sbjct: 148 RGELQHVEALIAQKAIRAPFAGKLGIRRVHQGQYLAAGETIVSLADISQLHVNFALGEQA 207

Query: 218 ASQVQVGSTIEFSNNASHGLK-KGKVYAYEPVIDANTRTLTLRAISPNEDRKFLPGMFVN 276
           A +V  G  +  + +A  G   + +V A +PV+ +  R + ++A  PN   +  PGM+  
Sbjct: 208 APEVHAGQVLALTVDAVRGQDFQARVVAVDPVV-STARLVQVQAALPNPQGQLQPGMYAG 266

Query: 277 IRFNLEVEEDALLVPSQSLIPELNGYKLFLVNQE----GIVQERQVQIGIRTDSEVQILD 332
           +R +       L VP  ++     G  +F+  Q+      V   QV  G R    V+I  
Sbjct: 267 VRLDAAQPSTVLAVPETAITYTAYGQTVFVATQDPQHGTRVSRVQVTTGERWQGRVEITS 326

Query: 333 GLSPGEMVLTTGVLQAKEGMKVK 355
           GL+PG+ V+ +G L+  +GM V+
Sbjct: 327 GLTPGDRVVVSGQLKLSDGMPVE 349