Pairwise Alignments

Query, 818 a.a., Type I site-specific restriction-modification system, R (restriction) subunit and related helicases from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 1137 a.a., DEAD/DEAH box helicase family protein from Serratia liquefaciens MT49

 Score =  139 bits (349), Expect = 1e-36
 Identities = 160/594 (26%), Positives = 255/594 (42%), Gaps = 85/594 (14%)

Query: 3   DKKTLSERDICTKFITPAIEKAGWDKTTQLLEEVSFTDGKIYVRGRLTARGKRKRADYIL 62
           D  ++ E +   + I   +  AGWD   +L      T  +  V+ + T+ G    ADY+L
Sbjct: 199 DILSIDEAETRRRLIDSRLLAAGWDVGDELKNTDHVTQ-EHPVKEQPTSTGDGY-ADYVL 256

Query: 63  YYKPNIPIAIVEAKDNRHSVRAGLQQALDYAEILDI-----PCVFSSNGDGFVFHDRTAT 117
           + + + P+A+VEAK    S   G  QA  YA+ L+      P +F +NG      D   T
Sbjct: 257 WDEAHKPLAVVEAKKASVSAEQGRIQARLYADWLEKEYGQRPVIFYTNGYDIWLWDDNKT 316

Query: 118 DGNIETELDIDSFPSPEELLKKYKQYKGIHTSEAQEVALQ----DYYFDGSGRSP--RYY 171
            G          +P P  +   Y +    +  + +E  L      +  D  G++   R Y
Sbjct: 317 HG----------YP-PRRIFGFYGKESLQYLIQQRETRLPLNSIPHVKDNEGKAVAGRLY 365

Query: 172 QQIAVNRTVEAVANGQGRILLVMATGTGKTYTAFQIIHRLWKSRAKKRILFLADRTALID 231
           Q   + R  E   N   + L+V ATGTGKT  A  +   +  +R  KRILFL DR  L  
Sbjct: 366 QLETIARVSERFTNKYRQSLIVQATGTGKTRVAIALSKLMIDARWVKRILFLCDRRELRK 425

Query: 232 QTRRGDFKHFKDKMTIIKKKVVSRADGKEELVSNNKRGIDTEDKAYEVFLGLYQGLTNAS 291
           Q      +   + + ++ K        K+E   N +           +++  Y G+    
Sbjct: 426 QAANAFNQFTNEPLYVVGK-------SKKEDRQNAR-----------IYIATYPGMMKIM 467

Query: 292 DIEDAYKDFSPEFFDLIVIDECHRGSAKEDSAWREILRYFNKATHIGLTATPKETKEVSN 351
           D       F   +FDLI+ DE HR      + + ++ +YF+ A  IGLTATP +    + 
Sbjct: 468 D------HFDVGYFDLIIADESHRSIY---NVYGDVFKYFD-ALQIGLTATPIDMVSKTT 517

Query: 352 IEYFG----DPIYTYSLKQGIDDGFLAPYRVVRVNLNVDAEGWRPEQGKKDKDGKEVEDR 407
              FG     P   YSL+  I D  L PY VV        EG + E+   D+  +E+ED+
Sbjct: 518 FGLFGCEGRIPTANYSLEDAIADNNLVPYEVVTHTTEFLREGIKREK-LSDQQIRELEDQ 576

Query: 408 -------VYNRKDFDKTLVIDERTQTVARKLTE-FLKGYDRF--AKTIVFCSDIDHAERM 457
                   +  K  D+ +  ++  + + R L E  LK  D     KTI+F  +  HA   
Sbjct: 577 GVDPNTLEFEGKSLDEAIYNNDTNRHILRNLMENGLKDADGQLPGKTIIFARNHKHA--- 633

Query: 458 RFALSNLNADLVAKNHKYIMQITGDNDEGKREL-DNFINPEETYP---VIATTSELMTTG 513
              L+ L  ++  +   +  Q+  + D    +L D+F   +E+      +A + +++ TG
Sbjct: 634 -LLLNKLFDEMYPQFAGHFCQVIDNYDPRAEQLIDDFKGLDESTNKELTLAISVDMLDTG 692

Query: 514 VDAQTCRVIVLDAEIKSMTKFKQIVGRGTRI------NEEFG----KMFFTILD 557
           +D      +V    +KS  KF Q++GRGTR+      N+E G    K  F I D
Sbjct: 693 IDVPEIVNLVFAKPVKSKVKFWQMIGRGTRLCPGLYGNDENGNSLDKQKFRIFD 746